GgaINT0126099 @ galGal3
Intron Retention
Gene
ENSGALG00000001169 | CRB2
Description
NA
Coordinates
chr17:9706890-9707302:+
Coord C1 exon
chr17:9706890-9706951
Coord A exon
chr17:9706952-9707274
Coord C2 exon
chr17:9707275-9707302
Length
323 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
3' ss Seq
ATTTTGCATAATTGTTTTAATGA
3' ss Score
-4.72
Exon sequences
Seq C1 exon
CTACAGCCAAGCAGCTGGTTTCCTCTGTTGGTGCCAGCCAGGCTTTGCAGGTAGGCTTTGTG
Seq A exon
GTAAATGTTTTCTCCTTTCTGCTACCTATAGACTGTGGTTTGAGTAGATAGGAACGATGGGTGAAATACCACTCACCCTTTCCCCTGGTTTATAAATATCTATAAAAGCATGGATTTAAGAGCTGGGGAAAATGCTTGGAAGGAGCGGCTAACAATAATACTTTATTGTGTTGTTTGTTTGTTTATTTGTTTCTTGTTTTTGAAGAAAAAGATGAGAATTTGGTCCACTTTTGTGCAGCAGTTCTGATTCTGCCACAGTTCCCTTTCCTGACACAGGCAAATCACTTAAGCTTTCCCGGCTTCATTTTGCATAATTGTTTTAA
Seq C2 exon
TGATAGAATCTATTTATCGGAATGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001169:ENSGALT00000038754:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(59.4=86.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]