GgaINT0126119 @ galGal4
Intron Retention
Gene
ENSGALG00000001910 | SNAPC4
Description
small nuclear RNA activating complex, polypeptide 4, 190kDa [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr17:7892781-7893290:+
Coord C1 exon
chr17:7892781-7892793
Coord A exon
chr17:7892794-7893223
Coord C2 exon
chr17:7893224-7893290
Length
430 bp
Sequences
Splice sites
5' ss Seq
AAAGCAAGA
5' ss Score
-0.84
3' ss Seq
GTTCTGTAGTTTACTTGCAGTTC
3' ss Score
3.02
Exon sequences
Seq C1 exon
CATCAAACGAAAA
Seq A exon
GCAAGAGCGTGTCCGGTGTAGAACTGAACGTTATTCTTACTCAGCAGTAATGGCAGTACCCGCAAACCCCTAATAGCCGTGTGTGAGGTACCCTGCGGTGCTTCATTCTGCATGTTTTCATTGACAAGCCCCTGGTTGGAAGTGTTTCCTCCGCTACCATTGACGTCTTTGTATTTCTGTGGTCCAACAGATGATGCTGAAGGTGACAGCTCGGATGCCCATGCAGAAATGGTAACTCTCTTTAAGCATATCTTTGTATCTGCCTAGTGAAGGGAGCAGGAAGAAAGGCTGTCTTATCTCCACCATTAAAGTGGAGAATTGCTTCAGTAGAACAAATGAGGTAGAAATCAGAAGGCATGGTCCTGAACTGTGTGCTTAGCAGGCAGGGGGACTCCAATGTACATATAAGTGTTCTGTAGTTTACTTGCAG
Seq C2 exon
TTCTGCAGCATCAGAATGGGTTTTACCAGGGCTGGGAGTCAGATGTTATGTCAGACAGTGGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001910:ENSGALT00000002951:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]