GgaINT0126184 @ galGal4
Intron Retention
Gene
ENSGALG00000004920 | TRUB2
Description
TruB pseudouridine (psi) synthase family member 2 [Source:HGNC Symbol;Acc:HGNC:17170]
Coordinates
chr17:4987540-4987854:+
Coord C1 exon
chr17:4987540-4987651
Coord A exon
chr17:4987652-4987734
Coord C2 exon
chr17:4987735-4987854
Length
83 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
CATTGCTCCGTTTCTTGCAGAGC
3' ss Score
9.7
Exon sequences
Seq C1 exon
GCGGGGCGGGGCGGGATGGCGGCGGTTCCTTCGGGGCTGTTCGCGGTGTACAAAGCGCCGGGAGTGGCGTGGAACCGCGTGCGGGATGCGGTGGAGGCGCGGCTGCTGCGCG
Seq A exon
GTGAGCGGAGCTCCGGGACCCCCCCCAATACACCGCGACCCCCCACACGCGGCGCTCTCCGATCATTGCTCCGTTTCTTGCAG
Seq C2 exon
AGCTCAACGCGGCCCCGGCGCGGCCCCCGCGGAGCCGCATCCGCTTCCTGCCCGCTGCCAGCGCGGGGCCGCCGGGGTTGGTGGCCGTGCGGGTGCCGGTGTTGGCCGAGCACCGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004920:ENSGALT00000007872:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]