GgaINT0126286 @ galGal3
Intron Retention
Gene
ENSGALG00000000972 | F1P3W1_CHICK
Description
NA
Coordinates
chr17:10451482-10452560:+
Coord C1 exon
chr17:10451482-10451840
Coord A exon
chr17:10451841-10452486
Coord C2 exon
chr17:10452487-10452560
Length
646 bp
Sequences
Splice sites
5' ss Seq
AAAGTTGGT
5' ss Score
1.99
3' ss Seq
CTGTGTGTGCTCTCTTGCAGTAA
3' ss Score
10.44
Exon sequences
Seq C1 exon
GAGAAGAGCGTGGAATCCGCCGCCGCCGCCGCCGCTCCCGGCATCGCCGCCGCTCCTTCGGCCGCCGTCGTCGTTTTGGTTTTTGCCTTTTTTTGGCCGTGCGAGCGCGGAGCGAGCGGCGGGGCCGAGCCCGGGCGCGCGGTGCCCCTGCGGCGCGGGGCCATGGACGAGCAGTCCCGCATGCTGCAGACCCTGGCGGGCGTCAACCTGGCGGGGCACTCCGTGCAGGGGGGCATGGCCCTGCCGCCTCCCCACGGACACGACGGGGCCGACGGCGACGGCAGGAAGCAGGACATCGGGGACATCCTGCACCAGATCATGACCATCACCGACCAAAGCCTGGACGAGGCGCAAGCAAA
Seq A exon
GTTGGTGTCGTCTCGTTTCGCCTTGTCTGTCGGTGCGCGTGGGGCGCGCTGCTCCGGCCCGCGGAGCGCGGCCGGGAGAGAACTTCTGGCGCCGGAGGAGCCCGCAGGCGGCCGGGGCGCGGCCGAAGCGCTATTTAATGCCTTTTGCCACGCAATAAATGCGGGAGCGGGCGGTGCTCGAGCCGGCCCCGTCCCGCGCGGCCCCGCGTCCGTCTGTCCGGGCGTCCGCGCGCCCCGGGCCGGGCCGCAACTTTCCGCGCCGCTCCCCCGTGCCCGGCGCGGCGGGAGATGGATGGCGGCGCCGAGCAGACACCGCCGCGGGGGGAGAGCCGCGGCCGTCCTAAATCACCGCCGTACAAAACAAAGCGCGGCCCGGGCCGGGCCGCTCCGCAATAAATCAGTCCCGGACGGCGCTGATTTACGCCGCGGGCCCCGGGGCCCGGCCCGGCCCGGCGCTGAGAGGCGCCGCCGCGGTGCCGCACGGAGCGCCGGCCCCGCTCGGGCCGCTCCCGGCGCGGGCCGGGGCCGATTTCGGGGCCGATTTCGGGGCCGACGCCGATGCCGGGCTCTGCGGGCGGCCTGGCGGCGCGGCGCGGCGGGCGCCATGTTCGCGGCGGGCGCTAACGCTGTGTGTGCTCTCTTGCAG
Seq C2 exon
TAAGCACGCGCTGAACTGCCACAGGATGAAGCCCGCGCTCTCCAGCGTCCTCTGCGAGATCAAGGAGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000972:ENSGALT00000001436:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=NA C2=0.269
Domain overlap (PFAM):
C1:
PF037928=PBC=PU(14.7=43.9)
A:
NA
C2:
PF037928=PBC=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTCGTCGTTTTGGTTTTT
R:
CGCAGAGGACGCTGGAGAG
Band lengths:
352-998
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]