GgaINT0126332 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:8693122-8693403:+
Coord C1 exon
chr17:8693122-8693173
Coord A exon
chr17:8693174-8693292
Coord C2 exon
chr17:8693293-8693403
Length
119 bp
Sequences
Splice sites
5' ss Seq
GGGGTTGGT
5' ss Score
0.32
3' ss Seq
CGTGTCATTTCCTACCATAGGCA
3' ss Score
9.05
Exon sequences
Seq C1 exon
GCAAAGAGAAGCATTTGTGCTGCCTTCCAAAGGGTATGAGGATACAGCAGGG
Seq A exon
GTTGGTGTCACAGTACCTGTGCTGCTCTCTTGGAGTTTGCTGCCCTTTGGCACCCAGCTCTGAGGAACCACGTGACTCAGTTAAAAATATCATATACAGCGTGTCATTTCCTACCATAG
Seq C2 exon
GCATATCAGCTCCAGCAGAAGCAGTGGCTGACAGTGCTGAGTGAGAAAGCCAAGCTAGAGCTTCAGGAAAGCCAGAGGTTTTTGAGTGACCTGCTTCAGAATGATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001762:ENSGALT00000002705:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGAGAAGCATTTGTGCTG
R:
TTCACATCATTCTGAAGCAGGTCA
Band lengths:
162-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]