GgaINT0126335 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSK5]
Coordinates
chr17:8004502-8005382:+
Coord C1 exon
chr17:8004502-8004620
Coord A exon
chr17:8004621-8005245
Coord C2 exon
chr17:8005246-8005382
Length
625 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGAAATCTTCCTCTCCTCAGGAT
3' ss Score
9.89
Exon sequences
Seq C1 exon
TAAGAAAGAGGTGCGTCCACTGAAACCACTTCCATTGAATATGGAGAGCGATCACAGCCCAAAGGGACAAAGGAAATCTCTCGGAGGAAGGAGTTCATACGGCTCAGCCTTTCATGAAG
Seq A exon
GTGAGCTCTGAGTTAAAGGATTTGGTGGTATTGTGTAAACATCTTCTAGCATGGCTTACAATATACTGTAGAATTCAAGAGTTGGAACCATTCATCACAAATTTCATTACATTCCCAGCTGATTCTGAGAATGTAAATGTTTATATTCGTTACACGTATCTAAATCATAGCACTCTCCATGTGTACTCCTGACAAAAAGAAAATAATCTTGAGATCTTAGAGTTACTTACCCTATTTACAGGCCTCTCTTTTCTTTCTCCCTGATTTCAGTTGACAGTGAAGTTAATGTTCAGAATTTGCTCCTGTGAGTGGACAGACACCACAATCCCCATCACTCTGTTTGGGGACTGATGCTCAAATGTCAGAGTGCAAAGGGAACCAAGCAGAGAGGCCCCGGCGCCCGCTCAGTGATCCCAGCAGTGCAGGATGGGATGGTTTCCCAACACCCCGAATTCAGGAATGGGTGCTACCTCATGCACTGTGTGAGGCAGCACAGTGGAAGCATACAGCTCTGATCTCCATTTGTCATGCCCAAACGATCAAGTTTAGAAACAAGATGCATCGCTCCTTTTCTCTGCCTGTTAGATACTCTATTTATGATGACTTGAAATCTTCCTCTCCTCAG
Seq C2 exon
GATCTCTGCCTGCAGAGGACGGGGAGCCATTGCATGGCCACCAAGGCCTGAACCTGCAGTCAGCTCCCACAGAGCTGCCCCACGGGGGGCCCTGCACAGCAGATGGCTCCAGGGAGAGCAGTGACCAGGACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001762:ENSGALT00000002705:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGAGGTGCGTCCACTGA
R:
CTGGCTGTCCTGGTCACTG
Band lengths:
254-879
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]