GgaINT0126351 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NFI9]
Coordinates
chr17:282345-283055:+
Coord C1 exon
chr17:282345-282474
Coord A exon
chr17:282475-282920
Coord C2 exon
chr17:282921-283055
Length
446 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTGTCCTCCTTTTCTTTTAGGAA
3' ss Score
13.07
Exon sequences
Seq C1 exon
GTTTTCCAGAGACGCTTGGATGGGTCAGTGAATTTTTTGCGAGATTGGAATTCATACAAACGAGGATTTGGCAACCAGCTGACGGAGTTCTGGCTGGGGAATGACAACCTCCACTTCCTCACCTCTCTGG
Seq A exon
GTAAGGGCTGCCCGCTCCCTGGGCTGGGGCAGAATGCAATCACTGCACAGCACTGCCATTAACAGACTGAGTGTCCCACATTCCTCCTGGGCCCCAAAGGTAATCCTAACCAGAATGCAGGCTCCTGCAGCCCAGTGCTCACAGAGACATTCACTCTAAAAAGAGGAGAAGTCAGAGAAGTGAATGAGCTGCCTGCATGACTTATCCTGGAGATAACACATCTCCCTGCCGTGACTGTGAGGACAGTCACGTTGCCCACAGACAGCCTTGCATTCACAGTGATGTACAGGACAGGCAGTTCTGCAGGAATTTGAAGTCTATCACAATCTCTGCGGCAGTGGCAGCTCCTCTCAAGTCAGCTGAGGGCTCCTTTACCCCTCACTTCTGAATCCCAGTTGCATGCTCACCACCAGCCCCTCGGAACCACTGTCCTCCTTTTCTTTTAG
Seq C2 exon
GAACCTGTGAACTCCGCGTTGACCTGAGAGACTTTGACAACAACTACTATTTTGCCAAGTATGCTTCCTTCCGAGTTTTAGGAGAGTCTGAGAAATACAAACTGGTTCTGGGAGACTTCCTTGGTGGAAATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009151:ENSGALT00000014902:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(20.2=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(21.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCAGAGACGCTTGGATGG
R:
CCACCAAGGAAGTCTCCCAGA
Band lengths:
255-701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]