GgaINT0126401 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7600645-7601204:+
Coord C1 exon
chr17:7600645-7600717
Coord A exon
chr17:7600718-7601078
Coord C2 exon
chr17:7601079-7601204
Length
361 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
CTCACGTGCTCTCCCCGGAGGCT
3' ss Score
1.53
Exon sequences
Seq C1 exon
CTTGTGCTGTTGCTGGTCTCTGGAACTGTGTTACCATCAACCCACTGAACATAGCAGCCGGAGTGTGGATGAT
Seq A exon
GTAAGTGGAGTTCCTGTTCCTTGTTTGCACTGGGAGGGAGGTTCTGTCCATGGGGCTGTGCGAAGTGAGGCACGGGGTGCTGCAGTGAAATGCACTGTCTGTGTATCTCTGGGTCTTACCTGACCAGCTGGGTGGAGACACGGGGTCTGTTTTATTCACAGCCCTCTCTACTCCCTACCCCCTTCCCCCCCCTTTTGCGGCTGGGATCCGGGGTCAATGTTTGGGAATTATCAAGAATGGGAGAAAACAAAGCATGTTCCAGCCCTGCCACGTGCTTCTGCCTGCTCTGAAGCATCGGTGGGGCTGGGAGATGGCTGACCCCGCTCCGGGCAGTGCTAACTCTCACGTGCTCTCCCCGGAG
Seq C2 exon
GCTCAACGCCTTCGTCCTGTTCCTGTGCGAGGCTCCGTTCTGCTGCCAGTTCATCGAGTTCGCCAACGCCGTGTCTGCGAGGGCAGACAAGCTGCGGGCCTGGCAGAAAGCTGCTTTCTACTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023558:ENSGALT00000039173:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=FE(22.0=100)
A:
NA
C2:
PF102334=Cg6151-P=FE(38.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGCTGTTGCTGGTCTCTG
R:
CCGCAGTAGAAAGCAGCTTT
Band lengths:
198-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]