GgaINT0126402 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7601079-7601380:+
Coord C1 exon
chr17:7601079-7601204
Coord A exon
chr17:7601205-7601289
Coord C2 exon
chr17:7601290-7601380
Length
85 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
GGGCTGCTTCTCTCTTCCAGGAT
3' ss Score
10.91
Exon sequences
Seq C1 exon
GCTCAACGCCTTCGTCCTGTTCCTGTGCGAGGCTCCGTTCTGCTGCCAGTTCATCGAGTTCGCCAACGCCGTGTCTGCGAGGGCAGACAAGCTGCGGGCCTGGCAGAAAGCTGCTTTCTACTGCGG
Seq A exon
GTGAGGATGCAGCCGGGGCCGGGCAGTGCTGGGTGTGTGGGGCGCTGTGTCCTCATGCCACCCCAGGGCTGCTTCTCTCTTCCAG
Seq C2 exon
GATGGCTGTGTTCCCTGTCATGCTCACCCTGACGCTCACCACTCTCTTTGGAAATGCCATTGCGTTTGCGACCGGGGTGCTGTATGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023558:ENSGALT00000039173:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=FE(38.5=100)
A:
NA
C2:
PF102334=Cg6151-P=FE(27.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCGTCCTGTTCCTGTGC
R:
CCAAAGAGAGTGGTGAGCGTC
Band lengths:
169-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]