GgaINT0126404 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7601399-7601793:+
Coord C1 exon
chr17:7601399-7601415
Coord A exon
chr17:7601416-7601702
Coord C2 exon
chr17:7601703-7601793
Length
287 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGT
5' ss Score
8.34
3' ss Seq
CCTGATGTCCCTTCTCTCTGCAG
3' ss Score
-2.28
Exon sequences
Seq C1 exon
TGTGATGCTGCTGGAGG
Seq A exon
GTATGTCCCTGCTGGACCTTAATGACTCCAACAAAACCCCTTGAAAGAAGGTCTGGGGCCTTGATGAACCTCTGAGCTTTCCCTTGGCAGCTCAGTGTAGGTTGCCCCAGGAAAGCCTTTGTGTCCCAACAGGCGTGAGGCTGGGAAGGGCCAGCAAGTCTCATTTCATTCCTGTTGTCACTTGGTATGGAGAGGCCTTGGCACAAGCTGGGAGACATTTGTACTGTGTGCTGTACTGATGGGATGGGTGCCCGGTGCTCACGTCACCCTGATGTCCCTTCTCTCTG
Seq C2 exon
CAGGGGAGATGCCATTTCCTACGCTCGGATCCACCAGCAGCAGAAGCAAATGGATGAAGAGAAGCTCACGGGGTGCCTGGAGGGACAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023558:ENSGALT00000039173:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=PD(3.7=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]