GgaINT0127278 @ galGal4
Intron Retention
Gene
ENSGALG00000003144 | TRIM25
Description
tripartite motif containing 25 [Source:HGNC Symbol;Acc:HGNC:12932]
Coordinates
chr18:6256599-6257192:-
Coord C1 exon
chr18:6257109-6257192
Coord A exon
chr18:6256665-6257108
Coord C2 exon
chr18:6256599-6256664
Length
444 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TGTTTTTTTCCTCCTCAAAGCAC
3' ss Score
7.47
Exon sequences
Seq C1 exon
CAAAACCACCACCTGGGAAAACAAAGCCTCCTTCAGTGCCTTCCCCAAACAAACCCGTTGTTAAAAAAAAGCTTGCTGCAGACT
Seq A exon
GTAAGTATTGAAGAACATCATCCTCTCCTAACCATGGCTTTAATATACCATTAAAGAAGAGTTCCAAGCAGATACCTTAGAGCTTTCTGCTCTGGTGGTGATGCAGCAGTTATGTGTAATGAGCACTTGGGCATGGGAAGGGCACGATGTTCTGTGGTATTTAGTGATGGATACTGTGTGAGCTGCAATCTGCACAGATTCAGTGGTCCATTAGCTTCAGCATGCATGTGTGCTTGTAGTAGTATCAGTGTGGATGGCAAAGGGAAGCTGAGGCTCCTCACCCTCTGGTTCCTTCAGTACCCCACTGCTCTTCTGCCTTCAATGCACTGGAATATTTCTTTTTTTATTTGTACTGAACATTTTTGATTGATTGATTCTTCCATGGACTTTTATGAAATGAATTTTGCTTATGAGCTAATCATGTTGTTTTTTTCCTCCTCAAAG
Seq C2 exon
CACGTACCCACAAAGACAAAATCCCTCACCCAACTAAAACCACTCTGCTGGAGGAGACAGATACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003144:ENSGALT00000004971:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]