GgaINT0127520 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8225690-8226132:-
Coord C1 exon
chr18:8226035-8226132
Coord A exon
chr18:8225849-8226034
Coord C2 exon
chr18:8225690-8225848
Length
186 bp
Sequences
Splice sites
5' ss Seq
AGGGTAATG
5' ss Score
5.98
3' ss Seq
GTGGTGTTGTTCATTACCAGGCA
3' ss Score
7.1
Exon sequences
Seq C1 exon
TGCCTTCAGTGTTAGGGGAGTGAAACTCATCTACACACCTGCAACCAGCACCACCAGGAGAATAATGGGAAGAGTGGCCTCAGGCTCTGTGCTGAAGG
Seq A exon
GTAATGCTGCTCGTGTCCTTGGTGCAGCTGTGAGGCTGCACAGATCTCAACCACAGGCATATCAGCCTTCATTGTGGTGGGAGGGAAAAGGGTTTGAACATCTCACTGTGAGTACATAATGTGGCTGATGTGTTGTCTTGTTGCACTGCTGATCAGGATTTCTGCTGTGGTGTTGTTCATTACCAG
Seq C2 exon
GCATAGCACTAGAAGAGGCAGTAAACGAGCAAAACCTGTCAGCAAGAGGACTTTTTAGGAGTGATGTGATCGGTGTTGTTTTTAAGGATGACTTCTCCTACCACCTCAGATTTCAGAGCTACAGCGTGATATCTCCCATTGAAACCTTTGAACACATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395:ENSGALT00000034529:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTCAGTGTTAGGGGAGT
R:
GGTTTCAATGGGAGATATCACGCT
Band lengths:
244-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]