GgaINT0127775 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:451207-451461:-
Coord C1 exon
chr18:451398-451461
Coord A exon
chr18:451306-451397
Coord C2 exon
chr18:451207-451305
Length
92 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGA
5' ss Score
4.17
3' ss Seq
CTTTTCTCCTTCCTTGACAGATC
3' ss Score
12.48
Exon sequences
Seq C1 exon
GGTAAATTCATCAGAATCCACTTTGGGGCCACAGGCAAACTGGCTTCTGCTGACATTGAAACTT
Seq A exon
GTAAGAGATGCTCCTGGCCTGCTCACCTTTCTTCTCAAATTCCTACCTCCATGTCCTGTCTTGTACCTAACTCTTTTCTCCTTCCTTGACAG
Seq C2 exon
ATCTGCTGGAGAAGTCCAGGGTCACTTTCCAGCTCAAGGCTGAAAGAAGCTACCACATCTTTTATCAGATCATGTCCAACAAGAAGCCAGAGCTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATCAGAATCCACTTTGGGGC
R:
GCTCTGGCTTCTTGTTGGACA
Band lengths:
151-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]