GgaINT0127790 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:443530-444113:-
Coord C1 exon
chr18:443871-444113
Coord A exon
chr18:443707-443870
Coord C2 exon
chr18:443530-443706
Length
164 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TTGCTCCCTTCTTATCAAAGGTG
3' ss Score
7.45
Exon sequences
Seq C1 exon
GAAGCAGATAGCTTGGCTGATGCTGAGGAAAGGTGTGACCAGCTCATCAAAACCAAAATCCAGCTGGAAGCCAAAATTAAGGAGGTGACAGAGCGGGCTGAGGATGAGGAGGAAATTAATGCTGAACTGACGGCCAAGAAGAGGAAACTGGAGGATGAATGTTCAGAGCTGAAGAAAGACATAGATGACCTGGAGTTAACACTGGCCAAAGTTGAGAAGGAAAAGCATGCCACTGAAAACAAG
Seq A exon
GTATGAGGCAGAAGATGTCACTCACACTCCAATAAAACAACATTGTGCTTTTGGAAACACAGAATGTCTTGAGTTGGAAAAGACTCAAGAGAGTTGTAAGTCCAAATGTTACAGGAGTCTTGAATCTACTTGCTTTAATTATACTTGCTCCCTTCTTATCAAAG
Seq C2 exon
GTGAAAAACCTCACAGAGGAGATGGCAGCCTTGGACGAGAACATTGCCAAGCTGACAAAAGAGAAGAAAGCCCTCCAAGAGGCCCATCAGCAGACACTGGATGACCTGCAGGCTGAAGAGGACAAAGTCAATACGCTGACCAAAGCTAAAACCAAGCTGGAGCAGCAAGTAGACGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=NA C2=0.915
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(40.6=100),PF0157614=Myosin_tail_1=PU(29.5=48.1)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(29.4=100),PF0157614=Myosin_tail_1=FE(43.9=100),PF0003816=Filament=PU(6.3=30.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGAGGATGAGGAGGAAA
R:
AGGTCATCCAGTGTCTGCTGA
Band lengths:
256-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]