GgaINT0129343 @ galGal3
Intron Retention
Gene
ENSGALG00000023867 | MYH1
Description
NA
Coordinates
chr18:400828-401225:-
Coord C1 exon
chr18:401082-401225
Coord A exon
chr18:400985-401081
Coord C2 exon
chr18:400828-400984
Length
97 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
GCTGTGTCCCTTCTTCACAGACC
3' ss Score
10.39
Exon sequences
Seq C1 exon
ACTCTAACCGTGAAGGAAGATCAAATCTTCTCCATGAACCCTCCCAAGTATGATAAAATTGAGGACATGGCCATGATGACCCACCTCCACGAACCCGCTGTGCTGTACAACCTCAAAGAGCGTTATGCAGCCTGGATGATCTAT
Seq A exon
GTAAGTACCAGCAGCTCTCTTGCTTGGGCAGCGTAGCTGGGGAGGACTGCTGTGCCAGGCTGAGTGGAAGCCAGCATGCTGTGTCCCTTCTTCACAG
Seq C2 exon
ACCTACTCGGGCCTCTTCTGTGTCACTGTCAACCCCTACAAGTGGCTGCCGGTGTACAACCCGGAGGTGGTGTTGGCCTACCGAGGCAAAAAGCGCCAGGAGGCCCCTCCACACATTTTCTCCATCTCTGACAACGCCTATCAGTTCATGCTGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023867:ENSGALT00000001420:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(34.1=58.3)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGTGCTGTACAACCTCAA
R:
GAAAATGTGTGGAGGGGCCTC
Band lengths:
169-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]