GgaINT0129346 @ galGal3
Intron Retention
Gene
ENSGALG00000023867 | MYH1
Description
NA
Coordinates
chr18:399788-400070:-
Coord C1 exon
chr18:399956-400070
Coord A exon
chr18:399881-399955
Coord C2 exon
chr18:399788-399880
Length
75 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TAACAAGATTTCTGTTCCAGGGG
3' ss Score
6.28
Exon sequences
Seq C1 exon
CGGAGAATCCGGTGCAGGGAAGACTGTGAACACGAAACGTGTCATCCAGTACTTTGCAACAATTGCAGCTAGTGGAGATAAGAAGAAGGAGGAGCAGCCAGCGGGCAAAATGCAG
Seq A exon
GTGAGCTCCTAAGTGTAAGACCCTGCAGATGTCAGACTGTTCTTGAGCTGTAGCATAACAAGATTTCTGTTCCAG
Seq C2 exon
GGGACACTTGAGGATCAAATCATCAGTGCCAACCCCCTGCTGGAGGCCTTTGGAAATGCCAAGACTGTGAGGAATGACAACTCCTCACGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023867:ENSGALT00000001420:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.282 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATCCGGTGCAGGGAAGA
R:
ATTTCCAAAGGCCTCCAGCAG
Band lengths:
170-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]