GgaINT0129357 @ galGal3
Intron Retention
Gene
ENSGALG00000023867 | MYH1
Description
NA
Coordinates
chr18:393879-394179:-
Coord C1 exon
chr18:394092-394179
Coord A exon
chr18:393997-394091
Coord C2 exon
chr18:393879-393996
Length
95 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
3' ss Seq
TAACTGTCTCATTTGCTTAGGTG
3' ss Score
8
Exon sequences
Seq C1 exon
GAGAACCTGAACAAGCTGATGACCAACCTACGGAGCACTCACCCCCATTTTGTGCGCTGTATCATCCCTAATGAAACAAAAACTCCCG
Seq A exon
GTAAGAACCTGAAGTAGAGAGAAATCTTAGTGTGACGCAGCCATTATGCTCTATGCTTTATAATGAAATATCAAATAACTGTCTCATTTGCTTAG
Seq C2 exon
GTGCCATGGAGCATGAACTGGTGCTGCACCAGCTGCGTTGTAATGGTGTGCTAGAAGGAATCAGAATTTGCAGAAAGGGATTCCCCAGCAGAATCCTCTATGCAGACTTCAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023867:ENSGALT00000001420:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGATGACCAACCTACGGA
R:
GCATAGAGGATTCTGCTGGGG
Band lengths:
178-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]