GgaINT0130562 @ galGal3
Intron Retention
Gene
ENSGALG00000005374 | MYO19
Description
NA
Coordinates
chr19:8092252-8093229:-
Coord C1 exon
chr19:8093116-8093229
Coord A exon
chr19:8092385-8093115
Coord C2 exon
chr19:8092252-8092384
Length
731 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
AGGGCTATTACCTCTTGCAGACC
3' ss Score
5.76
Exon sequences
Seq C1 exon
GATTTAAAACCTCACATCTTTGCAGTAGCTGAACAAACCTACAGAAATGTTCAAAGCCAGATAAACCCCATAAACCAGTCTATCATTGTAAGTGGAGAAAGTGGTGCTGGGAAG
Seq A exon
GTAAGGAGATTGTTTTCCGTTGTCCTGACATTGCTTTTATTGTTTGAGATTTGGCAGTGATTTGTAGTGCAGAATACTTCAGTGAGCAGAGAAGACAGAGCATGTAGCCAGCCTGCTTTAACAAGACTCTCTTGACATATGCATAAAGCATTAAATGATTGCTGCAGTCAAAGACTCAAAGTAACTGCTCTCTAGGTGACATCTGCCACTTGTGGAAGGGCTAAACTTGAATCATTCAATAGGAGTTGCACCTAAGTTGAAGTCTCAGCTTAGTCAGTTAGGGAGGTCATGTCTCAACAAACCCTTAAGAGACAGGAGAGTTCAGACCCTGTCCTAGCCCCTTCTGTAATATGCATTCCTATTCAGCAAAACACTTGAGAATATTTTTAAGCCTGAGAACATGGTTTGCTAAGTGCCAGTGACTCAGAGTCTATTTATATTCAATTCATCTTAAAATACTAGCTATTAATTCTAGCTAAGCTTCCAGATGGTTACGTCTTGGTAAAGCTGCCATTCAGCAAAGCACTTTGATTCCAGTAGGATTTACATGTGTGTCTGTTGTACATAAGCTGATGCACAAAAAGTTTTGGCTGAGCTTGAGCTATAAACCTGATATCATTACTCTCTAGCATTGTCACCAGATGCATGCTGTGTTCTCAGAAGCCAGCACTGTTTCACTGACTGACATAACTAATAACATGGTAAGAACAAAGGGCTATTACCTCTTGCAG
Seq C2 exon
ACCTGGACATCTCGCTGCCTTATGAAATTTTATGCTTCTGTTGCTGCTTCTGCTACTTCCCCAAAAGGCAATGAAGCTGTGGAACGGATAGAGAAGAGAGTGTTGGATTCCAACCCTATCATGGAAGCATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374:ENSGALT00000039165:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTAAAACCTCACATCTTTGCAGT
R:
AAATGCTTCCATGATAGGGTTGGA
Band lengths:
246-977
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]