GgaINT0131332 @ galGal3
Intron Retention
Description
NA
Coordinates
chr19:4190126-4190392:+
Coord C1 exon
chr19:4190126-4190287
Coord A exon
chr19:4190288-4190372
Coord C2 exon
chr19:4190373-4190392
Length
85 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGC
5' ss Score
5.9
3' ss Seq
CCCATGCTGTCACCCTCCAGGGG
3' ss Score
9.17
Exon sequences
Seq C1 exon
TGTTTCCCCTCCACCAAACAGCCCTGCTGGGCTGGCCAAGAGAAGACCCCCAGAACCTCCACCTTCACGCTCAAATCCCGGTCCAAATATTCCTGCAGGATCCCATAAATTGCACCGCCCTAAAGCAGATCCTCCTCCAGGAACTTGGGTGGTTTCACCACC
Seq A exon
GTAAGCACATCCAGATCCCACCTCTGAGGGCTGATGACCTTGAAGGGACAGCAAGGCATTCGTCCCCCATGCTGTCACCCTCCAG
Seq C2 exon
GGGACGGCCGCATCCGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001917:ENSGALT00000040254:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.185
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053013=SRCR=WD(100=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]