GgaINT0131333 @ galGal3
Intron Retention
Description
NA
Coordinates
chr19:4190373-4191040:+
Coord C1 exon
chr19:4190373-4190392
Coord A exon
chr19:4190393-4190969
Coord C2 exon
chr19:4190970-4191040
Length
577 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
GGAAGGGCCAATTTGCTAAGGAT
3' ss Score
-3.77
Exon sequences
Seq C1 exon
GGGACGGCCGCATCCGGCTG
Seq A exon
GTGAGCGGGGCAGACGCCTGCCAGGGCCGCGTGGAGATCTTCTACCAGGGGAGCTGGGGCACGGTGTGTGACGACGACTGGGGGCTGAGCGACGCCAGCGTGGTCTGCAAGCAGGTGGGCTGCGGCCCGGCTCTGGCGTACAAAAGCAACGCCTATTTCGGCTACGGCATGGGGCACATCCTGCTGGACAACGTCAACTGCGAGGGCAGCGAGCCCATCCTCTCCGCCTGCTACAGCCTCGGCTGGGGCATCCACAACTGTGGCCACCACGAGGATGCCGGGGTCATCTGCATGGGTAATGGGGCACGAGGATGGGACGTCCTTGCATGGAAACAGCCTGCCTGGCCAGGACAGGGGGGAGGGAGAGGAGCCAGGGCTGGGCACGCCACCAGGCTTGCCCCCTCGCTGCATTGCCCAGCCCTGCCATTATCTGCTGATTACCGTTTATATTGTTAATAACTCCCTTGAACTCCCTCGTTATGTTGGATAACGAGTGGAGCAGGAGATGATGGTGCTTTTGCTTTTCTGCTATTTGCTAACAAAGCTGCTGATGGAGTGGAAGGGCCAATTTGCTAAG
Seq C2 exon
GATGCCCCTCTCCTCCCCAGACATGGGCTATGCTGTGCTGGGGCTGCGTGGCAGCACTCAGTGCCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001917:ENSGALT00000040254:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=0.208
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]