GgaINT0134966 @ galGal3
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:989896-990265:+
Coord C1 exon
chr21:989896-990030
Coord A exon
chr21:990031-990130
Coord C2 exon
chr21:990131-990265
Length
100 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
CACGCTATCTTTGCCCCCAGAGT
3' ss Score
9.8
Exon sequences
Seq C1 exon
CGTGTCCCAAGTGGGCGTTCGGCCCCGGCTGCTCTGAGGAGTGCCTCTGTGTGCAGCCCAACACACAGCACTGCGACAAGCGGGACGGCTCCTGCAGCTGCAAGCCTGGCTACAGCGGTGTGCACTGCGAGACCA
Seq A exon
GTGAGTGTGCTGATGGGCATCCCTCAGCTCCGTCCTCCTGAGACCTCTGTGCCTCCTGCTTGCATAGATTAGGAACTGAGCACGCTATCTTTGCCCCCAG
Seq C2 exon
AGTGTGAGGCCGGCCGCTATGGGGAGGGCTGCAAGAAGAAGTGCAGCTGCCCTCCGGATGCACGGTGTGACCACATCACCGGGCGGTGCTGGAAGGAGTGTCCCCAGGGCTACCATGGGGAGAACTGTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=28.3)
A:
NA
C2:
PF0005319=Laminin_EGF=PU(73.8=67.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCTGCTCTGAGGAGT
R:
TGGTCACAGTTCTCCCCATGG
Band lengths:
244-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]