GgaINT0136020 @ galGal3
Intron Retention
Gene
ENSGALG00000003594 | Q90715_CHICK
Description
NA
Coordinates
chr22:2673621-2674543:-
Coord C1 exon
chr22:2674520-2674543
Coord A exon
chr22:2673724-2674519
Coord C2 exon
chr22:2673621-2673723
Length
796 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGA
5' ss Score
5.85
3' ss Seq
GAGCCAGCTGTTGGTTTCAGAGG
3' ss Score
1.8
Exon sequences
Seq C1 exon
GCACTGCTCATGTCACAGTAATGG
Seq A exon
GTATGAAATTTGTCCCTGTGCCCCAGCTCAATGGCCCATTTCACCCCATGGCCACTAACCATCCGCACGCCGCTTCCATCTGCTGAGCCTTGCTGCTGGGCTGGTACTACCCAGCACAGGCCCTGCCATCCTGCCCTGCCCATCTGTGTCCATGCTGCTTACTGTGGTGTGACTGCATGAAGGGGACTATCCCCGAGCAGAGGGAGCCCTGGCTCTCATCAGCCTTGCTCCCAGCAGCAGGAGCCTGCTCCTATTGTAAGCCCTGGTGCCCGTCCACAGCCAGCCCATGCTGCTCTGGCCTTGGTGGTATGAAGCGGAGCACTGGAGGGTCCCTGTGCTGTTCGTCACTCTGGCTCTCCCTGCACTGGGAGGTGCTGGGCTCCTTCCAGCAGGGCTCTAGCATGAGCTCAGCCCCGGTGGATTCCTTAGCAGGTGTTAATTGGGTGCCAGGTGGGGATGGCTGGGCTCATGCCCCCAGCGAGACATGCATGGGTGAACTTGGTGGCCTTGGTGAGTCCTTCCTGTGGCCCCAGCCCCACCTGGTGGTGGGGGGCCCCAGCAGGCTTGGCTCTGTGCTTGAGTGCTGTGAGGTTGCGGTTGGCTGGCTCCTAACATCTGCCGCAGCTCCTGCCACACTAACAGCCCAGGCTTCTGGCAGAGGGAAGAGCCTTCAACGGCTGAGACCCAGGGGATGAATGTGTGTGGCCAGTGGTGGGAGCAGGGATGGGAGTAAAGCTTGGAAGCTGTGTTCCTTTGTCCTGCTGCCTCTGTGTGCTGAGCCAGCTGTTGGTTTCAG
Seq C2 exon
AGGAGGAGCTGGTCCCACCGAAACCCAGAACACCTGAACCCAAGGAGCAGGAGGGCAAGAGGGAGATGCTGGAGTTTGTGACCGTGACAACACTGGAGCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594:ENSGALT00000005683:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.914
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]