GgaINT0137759 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P432]
Coordinates
chr23:855601-860967:+
Coord C1 exon
chr23:855601-855665
Coord A exon
chr23:855666-860526
Coord C2 exon
chr23:860527-860967
Length
4861 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TCCCTTGGATGTAATTGCAGAAA
3' ss Score
4.93
Exon sequences
Seq C1 exon
GCTGAATTAAATCTTGGGCAAACGAGGGAGAGACACCATCAAAATTACAGGCTATCAAGTCCACT
Seq A exon
GTAAGTAGCCTCTGCTTTTTCCTAATGAGTTGCTCTGGATGTGTGCATTGCTCTTTGCAGTGGGATCAGCCTGGAAACAGGAGTTTTTCTCTTCTTTGTCTGCCTTACTTTGCTTTTTCTTTGCTAAACATAGCAATTTTTTGCCTGGCAAGTCCTGCCAATGCTGCATCAGCATTTTATATTATTGAGCATATTTACAAGAAGTAATGATCTACCAGTGCTGCCCACTATTTACATTGTGAACCCCTTTTGGCCATAAATCACTTTGAAAGTTCAAGGGAGCATCTGTGCTGTCATTCAGAGCTGCAGCTGGGATCTCATCATGACGATCATGATCTCCAGGCAGCAGAATGCTCTGTGCTTTGCCCGTAGCCCTCTCTGGTCTGATAAGACATTGCCTTGCAGAGCTTCTTAAGAACCAAGGAACACTGTGAGCTACTGACAAAAAGGATCTGGTTTCACTCAGCTGTGTCTCTCCAGATTGATTAATCTGTAGTTTAAAAATGGGAAAATGCTAAATGTTAGTGGTTGCCAGTAAGAAGGGAGCCATACCTTTCTGCAGAGCAGAAATAGGAGCTTGCATTTTGCTTATTTCACTCATTTTCACGAAACTTGGAAGAATCCAAATATATTTAACATATGTCAGCTATGGTAGACTTTAAATGTGATGGAAGTTGGCCAAATGGCTTTGAAGTTATCACGGAGAGTGACCAGGCAGATTTTCCAGTAGCACACTAGCTGCTCTCACCTTCTTAAAAACAGCCTGAAATTCTGTGTGTGGAAGAAAATGCTGTCTGTTGTGGTTGGAATGGTACGGAAAGGCAGGGTTTCTGTTGGAATAGCTTCCCGCTAAGCCTGCTGGATCTCAATCTGTCTTACACAGGTCCAAACAGCAAAGAAAACCCTTCCATCTGCTGCGGTATTGCAAACAGCAGAGTTTTGCCACCAGGAGGGTTTTAAGGAACCACTGTAATGAAATGTTTTAGTGTGCTGTAAGCAACAGGCAAGCAGCAGAAAGCCAAGCACTGCTGTTTTCCACATCTTACTTGAAAGGATTGGGTCCTGGAAGCCAACCGCAAGGTAGATGAAGGATTCCTTCAGATGTCTTCCCAGTGATGTTCCCACCTGGGGCTCAGGTGTCACTTTTCTGCCAACTTCTGGGAGCTTCCATCCCAAATCCAATGGCAAAGAGCTTCTTCTAGGGAATGTGTGCAATGGTGGTCCCACATATGGAGTCAATGCTTGGCACTAGCTGGCTGGTTCTTCCTCAAGTCCTTTAGGAGGGCTTAGGTGAGGTTCAGGATTTGGAGTCTGTGTTCCTGTGCATCTTCACAGAAATCCATTGCAGCCATAATAAAATAATTCAAAATACCAACAAGGCTGTCTAAAATAGCATTCCTAAGCATTTTGTCTCAGGCTTTGGGGTGAAACTCTGGTCCCATTCAAATCATAGGGAATTTTCTCATTGATTTCCTTCATCAAGGTGGAAGCCTTTGTTTCTGTCTTAGAAACAAAACAGGCATTTCTGTTCGTGTTCATTCCATTGCACTTCAATTAAAACCCTGAGAAATTATGTTTGAGTAGGAATAATAGCTGGAATCCTCCATTTTAATGCCTGTACTTTGGATTTGGCCCCAGACATGCAATGTTAGCAGCTGGAAACCACGTCCCATAAAATCCATGTGACTTTTTCCTTAGGGATTTGCTGACATTGTGCCAGTGCTATGCATTGCCTTGCTGTGCTGATCTACAGAGAAGGCAGTGCAGAGCACAAGCTAAATGAAAGTCAACACCAATAAGCAAAAAAAAGTAGAGGCATAGCACATGACAGAGGAAAGAGACTTCTCAGGTCATGTGGAGGCAGAGATGAAAGTAAAAGCAAAAGATGTGCCTTTTCTGAGAAAAAAATAGGAGAATGAGGAAAGCATGATGGTAAGGGACATGGTTTAGTGGGGAAATACTGGTGGTAGGCGGACGGTTGGATGGGATGATCTTGGAGGTCTTTTCCAACCTTGGTGATTCTAGGAGTCTATGAAGGCTGGAGTTTTTGAAGGCAGATTTTGGCTGAGAGAAAGCTAAGAGAAACTGAAGAAAATGAAGAAAAATAAGATGAGAGTAGGCTTTTCTGTCTGCACAGTGATCCTCCTTAACTATCTCGGGTTTTATCCAGCGGGGCACAGCAGGGTTAGACATCCACCCTCAGCCCTTTGGAAACTCTCCTTCCCTTGTCCCACCATGTCACCAAGCTCATGGGAGAGAAACACTCTCACAGTTCTTAGCTTCAGTGGACTTCATGTTTTTCTGCTGCTTTATTCCGCGCTGTTGAATTTTCCTTGGAGAGGTATCAATCCAATGAAATGGTATCCAGCCAGGAGAACTATCTTTTGCCATTGCCATTCCAAGGGCCATTTCCAGTAATGGAAAAAATATGTAGAAAGTAGCCTGAATTGCCCCAGAATGGTCGCACTCACTGCTGTAGGCAGCAGGTGTGCTTGTTCATTGACCAATTCTTTAAATGCTAACTTTTGTGCAGAGTTCACGACTAAATCAGCTGCAGCCCATGTGTTCATCAGAGAACAGTCTGAACAGTTGGTGATGATAAAGAATCGTCTTAGAAAGCTTCCTCACAGGCCCAATTATTTTGCACTTAGGAGTGGATATAGAGTCTATAGGAGAAAACAGTATTAACATGTTTTTCAGGCTTTCTTTTGTTGGCAGTTCTTAAATGTGAGTGTGCGAGCTTGTGGGAGGCAGCATTCACTTTGTGCTTGCTGAAAAAGTCTCATCTTAAATCCTCTTCTACCACGTTAATGTGCTCTGTGCGTCACGAGTGGGGCAAAGAACACAATCTTGGGCAAAAATGGATGTGATAAATCAGCTTCCCAGCCGCCTTTGATCTTGAGTAAGTCCTGTGCTGTAAATACAGCACTCTAAATGTAGCCCAGACCACACTTGGTCAGCATGGAGGAGCCAGCACTCTCAGAAAGGGATTTCAAAATGTAATTAATTACGCCTCGTAGTAATGAGCATATAAACATGAGGCACCTTTCCTAGCGAGTCAGGGCAAGCGCAAGGCTGGGAAGAAGCAAAGTTCTTGCTGGAGGAGATCAGAAAAAGGAAAGTAAAGCATTAAGATAGGAGTGAGCTTTCTGTGCATGTAGCTCAGGTGTGGATGTCAGAGCAGACCAAGTAAGCCACTGCTCCTATTAATAAGAGCTGACAAATCAGGGCAATCAGTCTCACTGATCCGAGACCTTGATGTGGGATGCACTGTCCCCATGGGGTCCCTCATTGGCATCTGCACCTCCCAGTGATAGTTAGAGAGAATCATAGAATCACCAAGGTTGGAAAAGACCTACAAGATCATCCAGTCCAACCATCCACCCATCACCAATACTTCTCACTAAACCACGTCCCTCAACACAACAACCAAATGTTCCTTGAACACCTCCAGGGTCAGTGACTGCACCACCTCTCTGGGCAATAGAGGATAGAGAATTTAACAACTTGAACCCACCTCAGGTTAGATGGATCAGTCCCAGCCAAAGAATAGACGATTTTTAACCACTCCTGTAAAATCTGGTTGGTTGGATGCTGCCATATTTTTACACACGGCTAGATTAAATTACCTGACACCCCACATCTGTTCTTTCTCATGGAATGCGGAGCATCCACAGGATTGTAGGACCAGATCAACAGAGGATTTTGCATAGAACACAATGGACCTCTTCTGCTGGCTCTTCATTGTTGCTGCTCTGGATAAGGCTGGGCTATTGGGCAGCTCAAGTCTCAGGCACATGGAGTGCAATCCCCTGTGCCTCCGTTTTGTGTGCTTTACTCTTCAGCTCCATCCCTGCATCCTCTCCCTGTATGGGACAGTACCAAAGCAGCAGGGCTTTGAGCAAGTTCCCATTAAACCTATGCCATTCTGTGGTAGCAAAGCAGAGAATACTTTCGTAAGGAAGATACTTTCTTTTCTATCTCTCTGTAAATCATACGTATCAGTTTGCTTCACTTAAAAAGCCCCATTCTTGGGAACACTACTCCCACTTTCTGTTCCGTCTCTTGGTGATGCTGTCTTCTTTCAGTGCAATCAGAGTATTTCCTCTCCAAGTGTCTCATTAGTAGCTGTGTTTGATGACAAGCATGGTAGGTTTCATAGAGCTTCCCATTATAAAGAGGGTTTGCTTTTATAGACAAGCGATTTCAACATCCTGCCCGTATGAAATATGTGCATAGTATAGAGCTGGACTTGCATCATTGCTTGGCAGCAAAAGGCAGGAAATTAAAGCAACAAAATTTCAGTAAAAGAGTGCATGTCCTTTCTCTTTGCCTGCTATTGTTGTAAGTGACACAGAAGATTACTGCAAGCTTAGGGGCAGATTTCATGCAGAAGGATTTGCTTTTTATTTGTCAGTGAATGTATGTGCTGCATTAGGCAGTGCTTTGTATATAGTCAGTTTGCCTGTGTAGTCTGTTAGGAAGGGAAGTGCAATTACAGAAAACTGTAAAACTGTAAATGTTTGCAGGAGATTAGGAGGAATCCACGTTCGAAGCCATTTAAATACATTTTTCAGATCTGAGTGTGTTTCAAGTTACTGTATTTGGTTACAGCTGCAGTGCCAACTTATGTGTACATTACACTGAGCTCAAGTCCCTGAGGTTTGACTTTTAGTACGATTTATGTTTAGGTTATCGTTACAAGTGATGTCTCATAAATTGTGGACATTCAATCAGTTATTCTGAGTTTCTTGCAAAATATTTACAGTTGTTCTCTGTAAAAGTAGCACTGTTTAATTACTTCAATACAAATGCTGAAGTAATTCTTTTCTGTTTGTTTTTCCCTTGGATGTAATTGCAG
Seq C2 exon
AAATGTTGGAAATGCTTTTCCAAGGCTTTTGAACTCAGAAGTGGAACAGAAGGAAGACACAGGGGGACACACACCGTTCAGCGTTATTTTCCTTGCACAGGAAAAAAAGATCATTATGAGATGAGTGCTACAGTCTCAAGTTTTCAAAGGTTTGCATAACAAACAAGAGACACATTGTGGGTTGCATCTTGACTTTGAAGGCTTGCCACTGTCAACTGAAATAAAATGGCAAGGTTTAAAGCCTTAACCAAGTTCACAAGGAAAATATTTGGACTAAAAGTTTTGGAAAGTTTTCTCTCTTTGAAGTAGTTTGTCATGTGTTACCAATGTGAACTTTATTGACCTTGAAACGTTTTTTTTTTTTGAGTCAAATAGCAACTAGTGACACTTTAGTAAAATCTTAAATCAACAACCATCTCCTGGCGACTCCAGCTTCGTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021812:ENSGALT00000035354:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.098
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]