GgaINT0139595 @ galGal3
Intron Retention
Gene
ENSGALG00000013237 | BCAN
Description
NA
Coordinates
chr25:881713-885548:+
Coord C1 exon
chr25:881713-881793
Coord A exon
chr25:881794-885455
Coord C2 exon
chr25:885456-885548
Length
3662 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
ACTTTTGTACCCCCTTGCAGGGC
3' ss Score
11.04
Exon sequences
Seq C1 exon
GCTGCCTACTGCCGCCCCGGAGAAACCTCAGCTCAGCCCCACTCCGGGCTCCCGGGGACCCCCGCCCGCACCGTGAGCAAG
Seq A exon
GTGGGACACGGGGAGAGCCCCTCCTGCGGGCGCTGTGCTGCGCTATTCGTTGCCATATCTCATGTCACCTCTGTGCCAGCTGAAAGTAAGCGGGGAGGCGGTGTGAGGGGGGGGGTGGGTATAGCTCTCCCTGCTTGCTGGGGGTGACCTGGATGCCCAGCAGGGATGCTCCCACCGGTCCCCGCTTTGTCCTTGGCAGCTCTCTGCAAGTTTCTTTCTGGCGGCGCCGGCTCTGCAGAGCAAGAGTAAGGGGGGGGCGGGGGGGTGTGCTTGGGGATTGAGGTGGGAAAGTGACTTTGGGATTGATGCTAGTGGGGATGGGGGCTTGCAGGTCCCAGCATGGAGCCCATTCCTTGCTCAGCCACCAGGGACAGGTCCTTGACCTAAGGAGGATGCAATCGGGACAACACCAGGAAGGGAAAATGAGGCAGAGAGCTGGGGGGGGGGGGGGAGGGGATAGGGGGGAGGGGTGCATAGGGGCTGAATTTGCCCCATGCCACAGGGGATGGGGGAGAGCAGGGCTGCACAGCACCACAGGATTTTCCCATTGGCTTTTAGTTCTTTCCCCCAGCCCTGCTGGTGTCCCAAGGGGGGGGCAAAAAAAAAAAAAAAAAAAAAAAAAGGGAACGTTGTGTGGGGTTTTCATTGCTTTTCCCCTGCTGAACAAACCCAGAATGTGTGTGTGTGCCCAGGGCTGGGGCACTTTGATGTGCACCCCCTGCCCTCCTGCATACACAGTGTTTTGTCTCTGGGATGGAGGCGCTCCCTTTGAGCATCCGACTGAGCCCTCAGTGCTCCCCAGCTGGGAAGAGCCCAGGCAGACCCAGAACCTGTTGCTGCTTCTTCAGCTGATGGGGGGGGTGGGAAAGACCCTTTCTGCCCCTTTGCTCCGGTACCTCTCTGCATGAGGGGCTCAGTCCAGGAGTTGCTGCCCCCACCGGGCAGGTCCTTGCCCACCCCATGCAGCTCAGGTTAATGGTGCTCAGGGCATTTGGGGTTGCTTTGCAGGGAATAGGTTTGGACTGGGCAAACTGGAAGCCTGAGCGGTTCCTTGAGGTGCTGTGATTTTGTGCTTGGAAGGTGGATTTGAGGGGATGGGCTGCGCTGCCAAAAAACTGGGGAACCTTCTCCTCCACCCCACCCCAATCCATGCCTCTGTTTCCCCACCACAGCCCTGCAGCAGTGCGTGGATGTGCAAAGNNNNNNNNNNTGGTGGAAATTCTGTGGCTTAAATTAGAGTGAGCTCAGGGGAGGAAGAAAAAGAAAGATTGCTCTCATTCCAAAATACCTCGGCTCATTTTCTACCTGGTTTCCCAGGGAAATGGAGGCAATCAGTGTGCATGTGAGCATCTCACCCAGCCCCGTGGCTGGGAGCTCAGAGCTAACCCAGTCCTGCTCCTCGCTTCCCACTTTCGCTTTAGCTGCCTTTCCTTGCTCCTTCTCCCAGCCTTTCCCTTGCGAGGGCTAAGAAAAATAATTCCATTTGTGGCAAATAATAGGAAAAAAAGACATATCCAACCCCAAACCCCAAACCTCAAAACAGTGACGCCTGAGAGTCCTGCCATCATGGGACTCCTGTGGGCAGGGTGAGCTGGGTTTAACCCCTATAGGGCCCCGGTCCCACTGTGTTGGGTGTCCCAGCTATGGGTGGGCATAGGAGGGGAGCAGTCCCTCCGCTCACCCCAGCTTGCTGCACTCATGCAGCTTTAATCCCCTGAATTTCCTGCTGAGGTTTCATTGCTGCTCACTGCTTGCACCACTGCGGCGCCTGGGGAACAGGAATAAAAGAGCCTGGGACAAAAACTGCTTCGCTCCACCACTCTGGGGGTCACTGCCAGCGCCACGCTGGAGCCCAGCTGCAGCCACCACACAGCAGGGACCATCCCTCACACTCCTTTGTGGGGTTGAATTCCAATGATCCATCCAGAGCTGGGAAAGCCCCCAGCTTGTTGCTGGCAGCACCGGTCATGTCCTGGATGGGAAGGGATGGATGCGTGCGGTGCAATGCTAGGGCATATGCATGCATGGTGCATGGTGCTAGGGGCTGTGCATGCACGGTGCGTGGTTCTAGGGGCTGTACACACATGGTGCATGCTGCTCAGGGCTGTATATCCATGGTGCATGATGCTAGAAGCTGTATATCCACAGTGCATGGTGCTAGGGGCTGTATATGTGTGGTGCGTGGTGCTAGGGCTTGCGCATGTGTGGTGCTAGGGCCTGTGCATGCATGGTGCACGTTGCTCAGGGCTGTATGTCCATGGTGCATGGCGCTAGGAGTTGTACATCCAGAGTGCATGGTGCTAGGGGCTGTGCAAGCATGGTGCATGGTGCTAGGTGCTGTACATGCATAGTGCTGGGGGCTGTTTGCCCTTGATTCTTGGGCTGTATTCACACCACTCCCTGGTGCACTGCCCCCATGGGGTTCTCGGGGAGCATCTTTTGCAGAGAGATGCAGTTCCAGGACAGCCTTCCTTCAGCCTGGCTCTGGCAGCCCCCGACCTGGGCCAGAGCTCACCACAGAGGTGCCAAATCTGCTTCAGTGGCTGCCAAAATCAATGCAGCACAAAGAGCTCATAAATTACAAAGGCGCTCTGAGGCTCGGGGTCGCTGCGCACCAGTCCAGGGCTGAGGAAACCACCGAGCCCCAACGGGGCCCTTCAGAGGAGTGCATGAGGCCACGCTATCCTGCAGAGCCATGCACCATGCAGGGACCTCTCCATATCCCTGGTGTCCTCTCCAGATGGTTGGAGCTCCTCCGCGACATCCCCAGTGTCCCCGCTGCTGCTCTGTGGGGCTGGTGACGGCCGTGCTGGCTGCTGGGCTCTCCTTTCAGTGCTGCTCCTCAGCCGGCGGGGGAGAGCCCTTTGTGCCAGGCAGCCTTGAGAGAGACCTGGGACATAATGGCTGCTTTGCTCAGCCCTGGTTTTCCCAGCCTGTGCGCGGGAAACCTCCGGCGTGAGCTGAATGGCAACGAGGAGCCCTCCTGCTCCGTCCCTCCCCCACCGCCCCACGCTTTGTGCACCCTCAGCATCCCCATCTCTGGCTGAACCCCCCTGGCCACACGTGTGGAAGCATACACACAACCACATGTACATGCCCGCACGCGTGCACACGCATGCTGCAATGCACATGCAAGCTGCAATGCATGCACATGCCTGCACGCACGTCCAAAAGCCCAGCTTGCATGTACGCAGTCACTCTTGCATCGTGAGCCAGGGCTCAGTGGCTCATTCCTTCAACCCTGCTCAACACCAGCTATTACAATCCCCTCTGAGGTTTCTGACTGCGGTGTGTCAAGATGTGCAGCCCAGCTCTGGCATCTCCTCCTGCCTGGCTGTGCTCTCAGACTTTCCATGCCGTGCTCAGGATCTGCTGTCCCCAGAGGACCCCTCTCCCTTGGGCTGGTTTGGACCCTGGGCACTGAGCTGAGGCGCTGCAGTCCTCTTGCTCCCCAGGGCACGTCTGCACATTTCCTTCTGCTCCCTCTCCTTTCTGCCATCCAGGAGATGTGCTGGCTGCATGCTCTCACCGTGATGCTTTCGTGCATCACCCTGTGCATACAGGCACCAGTGTCTCACAGTCCTCCCTCATGCAGAGAGCTGGAGGTTATAATGCTTCTTTCCACTTCAAGCCCTCTGCTGGACTTTTGTACCCCCTTGCAG
Seq C2 exon
GGCACAGGATGGCCTCAGTCCTCCCACTGCTGCTGCTCTGGGCGTTTGCCCCCACAGTGGTCCCGGAGGTGCTCAGCCCTGAAGATGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013237:ENSGALT00000021615:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]