GgaINT0140045 @ galGal3
Intron Retention
Gene
ENSGALG00000014632 | Q5ZJ82_CHICK
Description
NA
Coordinates
chr25:1647899-1648420:+
Coord C1 exon
chr25:1647899-1647992
Coord A exon
chr25:1647993-1648353
Coord C2 exon
chr25:1648354-1648420
Length
361 bp
Sequences
Splice sites
5' ss Seq
GATGTACAG
5' ss Score
-3.25
3' ss Seq
TTCTTTTTCCTCCCTCCCAGATG
3' ss Score
11.72
Exon sequences
Seq C1 exon
CGGAGTCGACAGAGCAGCAGAAGGGCCAAGAGTGTGGAGGACGACGACGAGGGGCATCTGATCTATCGCGTCGGCGACTGGCTACAAGAAAGAT
Seq A exon
GTACAGCCAAATCGTAACATAATTTAGCTCTCTAGTTAAGCTCCCATCGCAGTCGCAGATCTGTCTTATCTTTCTGTTCCATTTTTCTTTCCATTGTTTATTAAAGAGAAACCCTCTCCTTTTCCTTCCCCTTTTTGTTGTTTTTGTTAAAGCTACGTTTATATTTTGTATTGTTATTGAAGTGGCAGGGAACTTAGGGCAGCTGCCTCGTGCAGCCGGTGTCAGCCTTCCGCTGCTCCGGTCTCTCAAGCTGTGTGCAGGTTAGGTTTTGCAATGCATTCTCTTCTGCCTCGTGTACGCGCCTCATCCAGGTCCTGCTCACCCTCTCATGCCCTTTTCTCTTCTTTTTCCTCCCTCCCAG
Seq C2 exon
ATGAGATTCTCAGCACTTTAGGGGAAGGCACGTTCGGCAGAGTGGTGCAGTGCATGGATCACCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014632:ENSGALT00000040610:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.406 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(0.1=0.0)
A:
NA
C2:
PF0006920=Pkinase=PU(6.9=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]