GgaINT0140046 @ galGal3
Intron Retention
Gene
ENSGALG00000014632 | Q5ZJ82_CHICK
Description
NA
Coordinates
chr25:1648354-1648817:+
Coord C1 exon
chr25:1648354-1648420
Coord A exon
chr25:1648421-1648700
Coord C2 exon
chr25:1648701-1648817
Length
280 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGC
5' ss Score
9.4
3' ss Seq
TTCTTCCTGTTTTTTGCCAGGGG
3' ss Score
8.96
Exon sequences
Seq C1 exon
ATGAGATTCTCAGCACTTTAGGGGAAGGCACGTTCGGCAGAGTGGTGCAGTGCATGGATCACCGGAG
Seq A exon
GTACGCAGGGCTGGGGGTGGCAGTGGGGCTGTGGGGTCCCCGCATATCTCCTCGTGGGTCACCCGTGTGCTGCAGGGGAACCTCAGCTCTTCCTGGAGAGGGAAGGGGCTCTGCTTTGTTCCTCGGCCCTTGAGGAGCTGCTTCCTTCTGGCTTGAGCAAGGGCAGAAAGCTGCGCTGCACGCATCCTTGCAGGAGGGGGCTGCTTCAGAAAGCCTTCTTTGTGGAGCACTGAGCCATCTCAGGAGCGGTGACGTGAAGTTTCTTCCTGTTTTTTGCCAG
Seq C2 exon
GGGTGGTGTTCGTGTTGCTCTCAAAATCATTAAAAATGTGGAGAAGTACAAGGAGGCTGCCCGGCTGGAGATCAACGTGCTGGAGAAAATCAACGAGAAGGATCCTGAGAACAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014632:ENSGALT00000040610:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(6.9=95.7)
A:
NA
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATTCTCAGCACTTTAGGGGA
R:
TCTTGTTCTCAGGATCCTTCTCGT
Band lengths:
182-462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]