GgaINT0140047 @ galGal3
Intron Retention
Gene
ENSGALG00000014632 | Q5ZJ82_CHICK
Description
NA
Coordinates
chr25:1648701-1649205:+
Coord C1 exon
chr25:1648701-1648817
Coord A exon
chr25:1648818-1649038
Coord C2 exon
chr25:1649039-1649205
Length
221 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
AGCAGAGCCTTTCTCCCCAGTCT
3' ss Score
2.44
Exon sequences
Seq C1 exon
GGGTGGTGTTCGTGTTGCTCTCAAAATCATTAAAAATGTGGAGAAGTACAAGGAGGCTGCCCGGCTGGAGATCAACGTGCTGGAGAAAATCAACGAGAAGGATCCTGAGAACAAGAA
Seq A exon
GTGAGTGCACTGGTGGTAGCAGTGCAGAGGGAAGGCATTGACTCAGCCCAGCTGCCGGGTGGGTGAGAGGTGCTGAGTCCTTTTGTAGCTCAGTTTCTGGTTCTTGGAGGCACATTGGGTTGGGTTCTGTGGGATAGAAACGCAGCAAGGAAAAGGAAAGCTGCGCCACAGAGCTGAGTGCTGCGTGCGAATCCTCCCTGCAGCAGAGCCTTTCTCCCCAG
Seq C2 exon
TCTCTGTGTCAGGATGTTTGACTGGTTTGACTACCACGGCCACATGTGCATCTCCTTTGAACTGCTGGGGCTCAGCACTTTTGATTTCCTGAAGGACAACAACTATCTGCCTTACCCCATCCACCAAGTGCGGCACATGGCCTTCCAGGTGTGCCAGGCTGTGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014632:ENSGALT00000040610:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.3=100)
A:
NA
C2:
PF0006920=Pkinase=FE(17.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGGTGTTCGTGTTGCTC
R:
ATTTCACAGCCTGGCACACC
Band lengths:
284-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]