GgaINT0141191 @ galGal4
Intron Retention
Gene
ENSGALG00000023953 | CR2
Description
complement component (3d/Epstein Barr virus) receptor 2 [Source:HGNC Symbol;Acc:HGNC:2336]
Coordinates
chr26:2578919-2579775:+
Coord C1 exon
chr26:2578919-2579131
Coord A exon
chr26:2579132-2579592
Coord C2 exon
chr26:2579593-2579775
Length
461 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCGGTGTTTCCCCCACGCAGAGG
3' ss Score
8.02
Exon sequences
Seq C1 exon
CAATTCCATGTTTACCCCCACCCGTAATAGCAAACGGAGAGCACAACGGAGGCCACATCGAGCTCTTCACTTACGGAGCTTCTGTCACCTACCACTGCCACGCTGACATCAGGGGGAGGAAGCATTTCTCACTGGTGGGGGATGCCTCTATTTTCTGTACGACCATCGACAATGTGAACGGCGTCTGGAACAAGCCAGCCCCGGAGTGCAAAG
Seq A exon
GTGAGCAGCAAACTGCCCACAGGGGACCTGGGAGGGGGTATTCATCCATGGTCATGGAAGAAACAGAAGGCTTGCAAAGATTCAGAAGCTTCCATGGTAGCTGCGTCCTTTCCTTTGTTCTCATTCTTAATAAAATGGGGAAAAAAAGAACCAAACACCCAAATAATAAAAAAAGATGTAATATGGGACAAAGACTTGAAAAATGCTGCTAACTCGTTGTGTCCATTTTCATCCCTTCTGGTGAATGTCTGCTCCAAGAATCATGGATTCATCGCATGGCTTAGGTTGGAGGGAGCTTTAAAGATCCCCCAGCTGCAGCCCTCCACCTATGTTAGCGATTGCCAACACCAGATCAGGCTACCTACGCCCCATTCACCTTGACCTTGAATGCTCCAAGGCTTTTAATCACCTCCCCCTGACCCATCGCCCATTCCCTGAGCGGCGGTGTTTCCCCCACGCAG
Seq C2 exon
AGGTGAGCTGCAGGGAGCCCCATGTGGAGCACGGCAGGCTGCAGAGCAGGTACAGAGCTGAGTACACCTACGGCGACACCATCATCTTCGACTGTGAATTCCGCTACGCGCTGCTGGGCAGCGACACGGCCACGTGCCAGGAGGATGGCAGCTGGGATCCACCACCACCACAATGCCAGCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023953:ENSGALT00000040338:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.177
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=93.1)
A:
NA
C2:
PF0008415=Sushi=WD(100=90.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACGGAGAGCACAACGGAG
R:
CATTGTGGTGGTGGTGGATCC
Band lengths:
358-819
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]