GgaINT0141333 @ galGal3
Intron Retention
Description
NA
Coordinates
chr26:2491449-2492465:+
Coord C1 exon
chr26:2491449-2491535
Coord A exon
chr26:2491536-2492285
Coord C2 exon
chr26:2492286-2492465
Length
750 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
ATGCCGAATTTCTTTTCCAGAGG
3' ss Score
7.85
Exon sequences
Seq C1 exon
GGTACCGGCTGGTTGGACAGTCCCTGAGGCGCTGCGAGCTTTCTGGAGCAGATATTGCATGGAGTGGTGATGCTCCCACCTGTCAGA
Seq A exon
GTAAGTAGGTCGCAACTAAACCTGGTCTAGAATCACCATATTAAGTTCTGAAAGTCAAAAAGTGGCACTTCCTTAAAATAAATAGAGCCTTGGTGAATAAGACTTCCTAAGAATATTCCTCTAGGATTGTTTTGTTTTGCATGCTTGTTTGGTTTCTTCTCCAAGTCTTCCCATTGCCAGCTTTTGATCTTTCAGAGTTGTGTAGGAGGAGTTGTCAGACGCCTGCAGGGATTTGTTCCTTTTGTTTCACAACCACAATAAATGAAGGAAGAAATGTGTCTTGCATGAGAGTGGGATACTGAGCAAAGCTGGGCTGAGATCTTCCACTGCACTGCTATCTAAGCCACAAGACCCTCTTGCAGGGGTTGGTCATGGCAATTAGGATCTGGTCGTTCCTTCAGATGGAATTGCTGTGGAAAGCTTGAGCTTGGAGCAGTAGAATAGTTGTGAGAATGCTTAACAGAGCTTGATTTCTACAACATTTAGTAAGTTTTCTTGGAATGTATGTGCATTATTTTGTTTATAGGCACAAAGTTATGTTTACATATGAAAAACTGTGATAATCCCATGGTACATGAAGACACTAAAAAGCCCTTTGTTCTTGAAATTATTCTCCTGTGAGTCGCTGAGTTCTACCCACACAACTCTGCTGAGAGCCTGCCCTGGAGCAGTGACCAGGATGGGCTTTATCTGAGCATCAACTACAGCATGTGCCTGTTCCCTCTTTAAGATGCCGAATTTCTTTTCCAG
Seq C2 exon
AGGTGGTGTGTCCAGTGCCACAGATCCAGAATGGGAGAGTATCCATTCCCAAACAGCGCTACAGATACAAGGACACTGTTAGCTTTCAGTGCCATGAAGGGTTCGTGCTGAAAGGCCATTCCATGGCCCAGTGCAAAGCTGACAAAACGTGGGATCCTCCTGTGCCCATCTGTGAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001164:ENSGALT00000001755:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTTGGACAGTCCCTGAGG
R:
CTCACAGATGGGCACAGGAGG
Band lengths:
255-1005
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]