GgaINT0141336 @ galGal3
Intron Retention
Description
NA
Coordinates
chr26:2493461-2494333:+
Coord C1 exon
chr26:2493461-2493637
Coord A exon
chr26:2493638-2494150
Coord C2 exon
chr26:2494151-2494333
Length
513 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CTGTACTTCTCTCTCCTTAGTGC
3' ss Score
10.06
Exon sequences
Seq C1 exon
CTGGCTGCGTGAGCCCAGGAATTGGGCACGGAAAAGTGATTGGATGGGAACCTCTCTACATGCCTGGAAACATCATCACAATTGAATGCAACACTGATAATATCTCAAAAGTCCTCCACAAGTCCCAGTGCCGACCTGGGGGCACATGGTTTCCTCCACTCCCTGCCTGTGACGGAG
Seq A exon
GTAAGTGCATGTCAACCATCCTCAGTGCCTGTCCCTTCTGACCTTGCTCTATTTGTAGCACATGGCAGGATGTTCAGGGGGCAAGAGGAAACCTAGTTTCTAAACCTGAAGATCCATCTACCCTATTTTTTCCCATTCTTATCACTACAGTATAACTGGTGCCTCACTTTCTCAGAATGAACTTAAAACTGAGCTCAGCCTGGTTCTGTCAGATGTAAGGGACCTGTATGGATATTGTTGTAAAATGGTCTTACAAATGTGCAGTTCTCATTATATATACCAGCTAATCACTCTTCCTATCCAGGGCATCAGAGAAGATGATGCTGGGCAGTGTACCTTTGTGTAGGAAGAAATCTGTGTGACACCAAGTCAAATGCTTTAGGGTAAAGTGGGCAGTGGGCTCCGTGCATTAGTGTCAGTGATGTGGAGGTGCACATACAGCCATGCACAGGTGTTGGAGATTCTCCTCTTGCCTCTAAGAGTGCTTTGTATTCTGTACTTCTCTCTCCTTAG
Seq C2 exon
TGCTGCACTGCTCCAAGCCCCCAGATATCCTCCACGGGGGCCACAGTGGCCTGGGAAAAGCAGTTTTCACTCCTGGAACATCTGTAAACTACAGCTGTGAGACTGGCTTCTCCCTCATTGGAATGGCATCCATTTACTGTACAGAATCTGGAGCCTGGAGCCATCCTTCTCCTGTCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001164:ENSGALT00000001755:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008415=Sushi=WD(100=91.9),PF0279317=HRM=PU(84.8=62.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAATTGGGCACGGAAAA
R:
ACAGACAGGAGAAGGATGGCT
Band lengths:
342-855
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]