GgaINT0141339 @ galGal3
Intron Retention
Description
NA
Coordinates
chr26:2496077-2496725:+
Coord C1 exon
chr26:2496077-2496256
Coord A exon
chr26:2496257-2496695
Coord C2 exon
chr26:2496696-2496725
Length
439 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TTGCTTTTCTCTTCCTTCAGCTT
3' ss Score
10.2
Exon sequences
Seq C1 exon
AGATCAGTTGTGTATTCCCAGAAGTTCAAGGCGTTAAGAAAACCACGGCTGGAAAAACATACAGATTTGGGACTAACATCACTCTTGAATGTGATGACGGGTACACGTTGGAAGGCCTCAGTCAGATTCAGTGCCAGGAGAACTTCAGCTGGGACCCTCCCGTGCCAGCCTGCAAACTCA
Seq A exon
GTAAGTGAAATGTAAATCAAGCAAAGACCAAAGAGAAAAATGCAAGTGCATAGTTTCATTCTTGTCTGCAAATTGTCCGCACGATGTGCTGGCGAGGCCTCTTAGGTCTGTTTAAAGCTGACTTTACCATGGCAGTAGAAAATAACAAACAAAAATAGCTATTTTTATCAGCTTAGTTTCAACGCTATCTTCCACAGCCATTCTACAGTTCAGGGCCTCTGTTTGCCTGGTAACGCTATCATTGCTGTTAATTTCCCTTTTAAACATGTAAGTGACTTTCTATTAAAATATATATATAAATAACGGTGAGTCTTTTTAAAGTTCTGTACTGTCAGCCTAAGCAGTAAAAACTTTATCAATGAAGTGATTAAAAACCGTTGAGGAACACTGTATTTTATTTCAGAATTGTTTACTGATTATTGCTTTTCTCTTCCTTCAG
Seq C2 exon
CTTCACCCAGGTCTGGCTCAGTAGGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001164:ENSGALT00000001755:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=90.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTTGTGTATTCCCAGAAGTTCA
R:
CTAGCCCTACTGAGCCAGACC
Band lengths:
207-646
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]