GgaINT0141340 @ galGal3
Intron Retention
Description
NA
Coordinates
chr26:2496696-2496955:+
Coord C1 exon
chr26:2496696-2496725
Coord A exon
chr26:2496726-2496879
Coord C2 exon
chr26:2496880-2496955
Length
154 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
TACGCTCTCTTCCCTCTCAGGAA
3' ss Score
11.1
Exon sequences
Seq C1 exon
CTTCACCCAGGTCTGGCTCAGTAGGGCTAG
Seq A exon
GTAAGCAGCTCAGAATATCTGTGGCCAGATCTTTGGCCTCATAGCCTCGGTGGTACTATTTTCCTCTCCTTACCTGAAGATATACTTATTATGTCTCTTGTGCCGATGTGTTTTAAAACACACAGTGCAAATAATACGCTCTCTTCCCTCTCAG
Seq C2 exon
GAATTGCAGCTGCAGTCGTTCTGCTTCTCCTGGGTGTGACCATTGGCTGGAAAATTATCTCTAAGAAGAAGGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001164:ENSGALT00000001755:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTGGCTCAGTAGGGCTAG
R:
TCTTCTTAGAGATAATTTTCCAGCCA
Band lengths:
90-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]