GgaINT0141342 @ galGal4
Intron Retention
Gene
ENSGALG00000001175 | C4BPA
Description
complement component 4 binding protein, alpha chain precursor [Source:RefSeq peptide;Acc:NP_989995]
Coordinates
chr26:2627456-2628718:+
Coord C1 exon
chr26:2627456-2627540
Coord A exon
chr26:2627541-2627846
Coord C2 exon
chr26:2627847-2628718
Length
306 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CTGTGCTGTGTTCTCCCCAGGCT
3' ss Score
11.53
Exon sequences
Seq C1 exon
CTACTACCGTACATATGAAAACTACAATTACAAAACCTCTCTGGACTAGATGACAGGACAGAAACGTTCACGTCTTGCACGGCAG
Seq A exon
GTATGGATTTCTATTCCTAACATAGAATATCTGCTACAGCTAGGAATTGGAGTTGTCCCACTATAATCCCGAAAACTCATTCCACCCCAACCTCTGGTAAGTCACACACACCTACAAAACCTCAGCTACAAACCTATCTTTTGCTCTCTGGCAAAGGCAGCTTTCCCATCATTTCCTCTTTGACAAAAAGAAAGCACTACCCAGGAGGGCAGGCCCTCCTTCCTTCCTAAGCGATGAGATAATACACACTGGTATGAAAGCCGGAGGAAATCTCATTTTCACATCGCTGTGCTGTGTTCTCCCCAG
Seq C2 exon
GCTGTGCCCTGTGCTGCCCACAACCGGCATTCGAGGCGTCCCCCCACGCGTGGAAGCACTGCTCACGTTGGGACTGAACCAAAAGAAAGCACTTTAACACGGAATCAACATTCATGCCCCTTCTGCTCCGTTAATTAAATCACTCTAAGGGCCCGACGAAGCTCAAGCTGTACAGAAGCCCATCAGAGGACTTCATTCCTGCACTGCACCTGTCCCATTCTCTGCAAACCCCGAGCTAAGGGAGAGCCAAAGCGTTCCTGTGTGTGAAGGCAGCAGTGAATGCTCCGTGTCCCACCCCAGCGCTGCTGAGCTCCTATGAACGCTTCACCCAATAAAACCTGAAGGCAGGATGGCACCCGCTTTGTGTTTTGTGTCTCCTTTTGCGTCCATCTCGATAGATCTGCATTACTTTAACAGCTAAACACAAGTGCCGCGGCTTCCTGAGGAAAGCACAAAAGGCCCCTCCCTCGGGACGCACGCAGGCGTTTGATATTATTTGCTTTTTTTTTTCTTCTTTTCAATAAGGCTTTGTTCGCCTGGGCTGCACCACAGATCATACCGGGAAGCGGTTCCGTCACCCGGAAGGAGGGTGGGTGGGCGGGCGGGCCATGCTTAAGAAAAACCCCTCTCCACCGGCTGCGACCCGCCGCTCTCACACTCTTCCCTCAGCCCGGCGGCCGCTCCGCCCTGACGAGGAGGGCCGGGCACAAAATGCCCGCCGTCTTGCAGAGCACAGGGGTGCACAGCGCGCATGCGCCGCGCGTCGGGAGCCGTCGCCTGAGAGAGGCCTCGACGCGGAGCCGCGGGCATGGCGGTGGGGGTGTTTGCGTTGGCGGTGCTGCTGGCGGGGCTCGGCGCGGCACGGGCGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001175:ENSGALT00000046167:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGGACAGAAACGTTCACG
R:
GCGTTCATAGGAGCTCAGCAG
Band lengths:
358-664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]