GgaINT0141669 @ galGal4
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr26:1736069-1736587:-
Coord C1 exon
chr26:1736458-1736587
Coord A exon
chr26:1736206-1736457
Coord C2 exon
chr26:1736069-1736205
Length
252 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACC
5' ss Score
8.55
3' ss Seq
CTTGCTGTCTCGGCTGCCAGGCA
3' ss Score
7.37
Exon sequences
Seq C1 exon
TGTGGCGATGATCTGCGGCAGGACATGCTGACACTGCAGATGATTCGGATCATGAACAAAATCTGGGTGCAGGAGGGGCTGGATATGCGCATGGTCATCTTCCGCTGCTTCTCCACGGGCCGTGGACGAG
Seq A exon
GTAACCCAGCATCAGGGCATCAGTCAGCAAGTTGTGATGCTCTCAGATGGGCAGTGGTGTGGGAGGTCCTGGGGCTCTGTGGAGAGAAGCCACCACGGGTTGCTGTGAGCCACTGTTGGGTTTGATCCCTCCAGACGGTCTGTAGGAACGTGACTTTGTAGGGTCACCTCAGGGTTGGTGACAAGGGGTGCCGGGATCTTGGTGCTCCCCGGGTGGGAAGGACGGGTCTCACCTTGCTGTCTCGGCTGCCAG
Seq C2 exon
GCATGGTGGAGATGATCCCCAACGCCGAGACCCTGCGTAAAATCCAGGTGGAGCACGGCGTGACGGGCTCCTTTAAGGACAGGCCACTGGCCGACTGGCTGCAGAAACACAACCCCGAGGAGGATGAATATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(19.9=100)
A:
NA
C2:
PF0045422=PI3_PI4_kinase=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATCTGCGGCAGGACATG
R:
TTCTCATATTCATCCTCCTCGGGG
Band lengths:
260-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]