GgaINT0141670 @ galGal3
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
NA
Coordinates
chr26:1587825-1588254:-
Coord C1 exon
chr26:1588118-1588254
Coord A exon
chr26:1587995-1588117
Coord C2 exon
chr26:1587825-1587994
Length
123 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TCTCTCTCCATCCTTTCCAGGCT
3' ss Score
10.24
Exon sequences
Seq C1 exon
GCATGGTGGAGATGATCCCCAACGCCGAGACCCTGCGTAAAATCCAGGTGGAGCACGGCGTGACGGGCTCCTTTAAGGACAGGCCACTGGCCGACTGGCTGCAGAAACACAACCCCGAGGAGGATGAATATGAGAAG
Seq A exon
GTGAGGAGCAGCCTGGCAGGGTCCCTGCCCTGCGTGTCCACCTCTCCAGGGATGACATACATCTCATGGGGGAGCGGGGAAGGTGAGCTGCCCCGCATTTCCCTCTCTCTCCATCCTTTCCAG
Seq C2 exon
GCTGTGGAGAACTTCATCTACTCCTGCGCTGGCTGCTGCGTGGCCACCTATGTGCTGGGGATCTGCGACCGGCACAACGACAACATCATGCTCAAGACCACTGGCCACATGTTTCACATCGATTTCGGCAGGTTCCTGGGCCACGCTCAGATGTTTGGCAACATCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(20.8=100)
A:
NA
C2:
PF0045422=PI3_PI4_kinase=FE(25.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGACCCTGCGTAAAATCC
R:
GGAACCTGCCGAAATCGATGT
Band lengths:
249-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]