GgaINT0141979 @ galGal4
Intron Retention
Gene
ENSGALG00000023950 | CR1L
Description
complement component (3b/4b) receptor 1-like precursor [Source:RefSeq peptide;Acc:NP_001028815]
Coordinates
chr26:2604718-2605277:+
Coord C1 exon
chr26:2604718-2604741
Coord A exon
chr26:2604742-2604982
Coord C2 exon
chr26:2604983-2605277
Length
241 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
GTCCCTTTTGCCTCCTGCAGGAA
3' ss Score
11.47
Exon sequences
Seq C1 exon
GCGGAGCGAGCAGCATCATTGTTG
Seq A exon
GTAAGTGACGCGTACTGCAGATCGCTGTGCTCCCATTGTTGGGTATCTGCACGTTACTGGTTCTTTCTTTGTGTTACTTAAACCTGAAACAGGCTGAAGAGCCTTCCATAGCAGTCTGTTGTCATGCTCATGTTTTTGTTGCTGTGAAAAAGAGGTGGGGAGGAATGCGGAGGTGCTGCATGTCTGCGGCTGGGAGGGAAAGGGTGAGTGCACGGCCTGAAGTCCCTTTTGCCTCCTGCAG
Seq C2 exon
GAATCCTGCCCCTCCTCCTGGCAATGCTGGTGATGAACTTCTAGATGAGGGCACGGCTGCCACGGGGAGACGGTGGGATGTGGTCGTGCCCCGCGTTGCCTTCTGGAGAAACCAACCCTGCAATACTGACTGGCAGATCTGTGATGGATAAAGATGGCGTTGAGCCCTGGTGTCCCCAAGATGAGCACTTGCACTTTTTGGTGTTGTGCTGGACACAACAATGGTGTGGCTGTGCTGGTGGCTCAGATGCGAGTGTGGTTATCGCTATGGGAAGTGGAAGTGATGCCAAAAGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023950:ENSGALT00000040327:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]