GgaINT0142508 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NK40]
Coordinates
chr27:1684382-1685253:+
Coord C1 exon
chr27:1684382-1684434
Coord A exon
chr27:1684435-1685232
Coord C2 exon
chr27:1685233-1685253
Length
798 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ATCTCCTCTTTGCCTTCCAGCTG
3' ss Score
10.52
Exon sequences
Seq C1 exon
TGAAATTTCGGATTGTCTCTTTGGATAAAGATTTCATTGCCAGCGACAAGAAG
Seq A exon
GTGAGAGAAAGGTCGAGGACAGGGGGAGGTGACCTTGGCACTACCGTCCTTCTGTCTGTAGCAGAGATGTGGGGATCAGCCAGTGGGAATCCTGTCCCAGCCAACTGAGCTGCTGAGTGCCCTGAGCTAGGAATGTGTCGTGTCATTAATGAAGGCAAGAAGGGAGGCAACAGAACTGCACACGTGACATGGCAATGTTCCCAATTTCATTGAGAGATGTAGGAGCAGTGAGTAGGAAGCAGGGAAAGTGCTATTGATATCGATATGATCACAGGACACCGGAATTACAGGTTAGTTCAGTCAGGTGCTCCTGAGCAATCGATCATGTCAATGGAAGGGCAAAAGGTTCCCAGATGAAATGTCAGAGGCAAAGGCACTGGGAGATGCCACCTCCCCATGCTGTGCTGGCAGTGCTCAGCCCATCTCAAGCCATCCACAGGCTCATAATCAACCCCAAAACACAACATAAGGATGGAATTTCACAGCCTGCCAAAAGTAGAAGGATGGGACCACGAAGGTTGGAAAAGACCTCTAAGATCTCCAAGTCTAAGCCAACCTGTCTCCACCATGCCCACCAACCATGCCCCTCAGTGCCATGTTTCTTGAACACCTTCAGGGACAGTGAGTCCATAACTTCCTTAGCAGTTCCAATCCCTGACCTCTCTTTTGGAGAAGAAATTTTTCCTAATATTGAACCTAAATAGCTCTCACTGTGCTTTGCACATGGCTTCAGAGATGTCCCCACCTTGCTGAGACCCATTGAATTTCCCCTCTAACCATCTCCTCTTTGCCTTCCAG
Seq C2 exon
CTGCCCCTTGTCTTCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000293:ENSGALT00000000384:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(17.2=100)
A:
NA
C2:
PF0183514=A2M_N=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]