GgaINT0142512 @ galGal3
Intron Retention
Description
NA
Coordinates
chr27:1590968-1591286:+
Coord C1 exon
chr27:1590968-1591091
Coord A exon
chr27:1591092-1591171
Coord C2 exon
chr27:1591172-1591286
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGTTGACTCCCTCCTTCCAGACC
3' ss Score
7.94
Exon sequences
Seq C1 exon
ATACACCTACGGGAAGCCTGTCCAGGGGAAGGTCCACGCTAGCTTGTGCCAGCCTTGGAGTTTCAGAAGGTACCCACTTGTTCTTAAGGAAAGCAAGGACATCTGCACGGAGATTGACGGGCAG
Seq A exon
GTGAGCAAAGCTTGGAGGAGGGGTGAGACTGGGACAGCCCATAGCAGTGCTGGTGAGTGTGGTTGACTCCCTCCTTCCAG
Seq C2 exon
ACCAAGAAGAACGGCTGCTTTTCAACAGAGGTCTCGATGTCTTCCTTCAACCTGAGCAACTACAATCTGCGGAAGGAATTCCAAGTGAAGGCATCGCTGGTGGAGGAGGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000293:ENSGALT00000000384:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGTCCACGCTAGCTTGTG
R:
CCTTCCGCAGATTGTAGTTGCT
Band lengths:
173-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]