GgaINT0142521 @ galGal3
Intron Retention
Description
NA
Coordinates
chr27:1593688-1595144:+
Coord C1 exon
chr27:1593688-1593781
Coord A exon
chr27:1593782-1595035
Coord C2 exon
chr27:1595036-1595144
Length
1254 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
CATGGTGGAAAGCGGGTTAGAAA
3' ss Score
-8.01
Exon sequences
Seq C1 exon
AATGCAGCACTGAAGCTTCTCACCAATGCTAAGACAAGGGATGATTGCAAAGTGCTTTACAAGCCTCAGAGGCACTTTTTGATGGGTGCTCCAG
Seq A exon
GTCAGCATCCTGCCAGCATGCCCTGGAGACATTCAAAGCCAGGCTGGATGGGGCCCCCAGCAGCCTGATCTGGTGGGGGGCAGCGAGCCCATGGCATGGGTTGGGGCTGGTGGGCCTTTGAGGTCCTTTCTAACTCAACCATGTCATGATTTCGTGTTTCTATGATCTTTAAGGTTCCTTCTAACCCAGCCATATCATGATTCTATGGTTCTACAATCTTTAAGATCCCTTCCAATCCAATGTCATGATTCTACAGTTCTGCAATCTTTAAGGTCCCTTACAACCTAAACCATTTTAAGATTCTATGATCTTTTTGAAGAGGCTTCATACGGGGGGGGCTGGGCTTGTGTCTCCGCTCTTGGTGGGATTGGAAGGGTTGTCTGACAGGGCTTCCATGCTGGCTCAGTTCTTAATGGGGGGATTTTGGCTGCTTTTGTCTGCCTTCTGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCAGGTCCCATGCCAGAGAAGATACAATGGATATGGTCATGGTGGAAAGCGGGTTAG
Seq C2 exon
AAATGCCCATGTTAGCTAGTGTGCCAGGTGCTCCCAGCAACGAGGAAGAGCCACCAGCTCCCCGGACTCATTTCCCAGAGACATGGCTGTGGGACCTGGTGCCCGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000293:ENSGALT00000000384:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.405
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0020717=A2M=PU(10.0=24.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCACTGAAGCTTCTCAC
R:
CAGGTCCCACAGCCATGTCTC
Band lengths:
190-1444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]