GgaINT0142522 @ galGal3
Intron Retention
Description
NA
Coordinates
chr27:1595036-1595484:+
Coord C1 exon
chr27:1595036-1595144
Coord A exon
chr27:1595145-1595258
Coord C2 exon
chr27:1595259-1595484
Length
114 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CTGGATGCTCTGTCCTGCAGAGA
3' ss Score
7.88
Exon sequences
Seq C1 exon
AAATGCCCATGTTAGCTAGTGTGCCAGGTGCTCCCAGCAACGAGGAAGAGCCACCAGCTCCCCGGACTCATTTCCCAGAGACATGGCTGTGGGACCTGGTGCCCGTGGG
Seq A exon
GTGAGTGGGAATGGGGACAGTCCCCAGGATGGCTCCTTCTCCTCAATGGAGAGAACCAGCCCAGATACCACCAGTGGGTGACACGTGGCAGCCTCTGGATGCTCTGTCCTGCAG
Seq C2 exon
AGAGGAGGGTTCTGCAGAAATGGTGGTGACGGTGCCCGATGCCATCACAGAATGGAAAGCTGAGATGTTCTGCACAGCACCCGTGGGCTTGGGGCTAGCCCCTGCCACCACCCTCACAGTCTTCAAGCCCTTCTTCGTGGACCTGGCGCTGCCCTATGCTGTGATCCGTGGTGAAGCCTTCTCTCTTGTTGCCACCGTCTTCAATTATCTGCGGCAGTGCCTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000293:ENSGALT00000000384:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.405 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PU(10.0=24.3)
A:
NA
C2:
PF0020717=A2M=FE(83.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCATGTTAGCTAGTGTGC
R:
GTCCACGAAGAAGGGCTTGAA
Band lengths:
248-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]