GgaINT0142541 @ galGal3
Intron Retention
Description
NA
Coordinates
chr27:1601430-1601872:+
Coord C1 exon
chr27:1601430-1601471
Coord A exon
chr27:1601472-1601591
Coord C2 exon
chr27:1601592-1601872
Length
120 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
ACCTCTGTTTTGTTTTGAAGAGG
3' ss Score
7.6
Exon sequences
Seq C1 exon
GTGACCGCACGGATGCTGCCTACAGCGCTCCTTGCAGCTCAG
Seq A exon
GTAGGGGCTGAGGGGTCATCCCTTCATCGGGACCCCCAGCATGGTGGGACGCAGGGACAGGACCTGCGCGGGGGGCAGAGGGGCTCTCCTCTCACAACACACCTCTGTTTTGTTTTGAAG
Seq C2 exon
AGGATGACAGACAGACAAAGGAGAATTTCTAGAGGAGCCCCACGTGTAGCAGGTGATCCCATCTGCCCGCCTTGATTCCCTCAGCCAAGAACCAGGACAGCCCAAGCTCTGCTCCCACCGACCCTACAGGGGGCAGCTCTACCAGCAGCACCACATAGCTCGGCAGCTTCTCCCCCCCATGCAGCTCCTGCTCTGCCACCAGCCAGTGGAACCACAGCTGAGGCACACTGGGGACAGGACAACTCGAAAATCTGCACCTCCTGCCCCGATTTTATGGGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000293:ENSGALT00000000384:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(8.0=46.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACAGCGCTCCTTGCAG
R:
CTCAGCTGTGGTTCCACTGG
Band lengths:
246-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]