GgaINT0143127 @ galGal3
Intron Retention
Gene
ENSGALG00000003256 | ATP6V0A1
Description
NA
Coordinates
chr27:4585933-4586418:+
Coord C1 exon
chr27:4585933-4586011
Coord A exon
chr27:4586012-4586320
Coord C2 exon
chr27:4586321-4586418
Length
309 bp
Sequences
Splice sites
5' ss Seq
TCAGTACGT
5' ss Score
5.95
3' ss Seq
TAATGGTACTGTCTTTGCAGGAT
3' ss Score
7.4
Exon sequences
Seq C1 exon
CTGAACCCGGACGTGAATGTCTTCCAGCGTAAATTTGTTAATGAAGTCAGGAGGTGTGAAGAAATGGACCGAAAGCTCA
Seq A exon
GTACGTCCCTTAATGTGTCCCGGTGTGCCTGTAATGCTGCAGCTTTTATGGGGAAATGAGTCCTGTAGTTTAAGCCTAGAAAAATGTTAAAAGGCAAAGTGCAGATTGGAGAACTGAAGGCTGCCTTTCTTCTGTATATCAGCCAGTCAGACTGCCTCCAAGGAGTCATTTCCTAGTTGAAAAATAACCCAATCACACGATCTTGTAGGTGAAAGGACTCACAGATCAGCCTATGAGTGTGGGTTAAAGGAGTGGTAACTTGACATTAAGGTATCTTTTCAGCTAATGTTAATGGTACTGTCTTTGCAG
Seq C2 exon
GATTTGTTGAAAAGGAGATCAAAAAAGCAAATATTCCTATCATGGACACGGGTGAAAACCCAGAGGTGCCATTTCTACGTGACATGATTGATTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003256:ENSGALT00000005153:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.3=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(4.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]