GgaINT0143517 @ galGal4
Intron Retention
Gene
ENSGALG00000000410 | TLK2
Description
tousled-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr27:2368628-2369816:+
Coord C1 exon
chr27:2368628-2368697
Coord A exon
chr27:2368698-2369772
Coord C2 exon
chr27:2369773-2369816
Length
1075 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
TTCTTTGTTTTTCTTTTTAGGAA
3' ss Score
13.11
Exon sequences
Seq C1 exon
ACTCCTGAGAAAAAACAGAATGACCAGCGGAATAGAAAAAGGAAAGCAGAAGCATATGAGACCAGTCAAG
Seq A exon
GTAATCCATTCTCCTGACCCAGCTGCAGGATTTCTGAATGGTTGGTAATTTGTGTACGTTTTGCACAGTCAGTGTCTTAGGAAACTAATGGCTCCTCTCAAGGGTGTGTCAGGCAGCTTGTTATGAACTACTCCATGATGGTGTAGTTCTCTTCTGGGAGCCTTGTTGTCCTTATTGGCAGGAAAGCACTCATCTTCAGCTTATTTGCCCAAATGTTTAGATTTTTTGGGACAGACTGCCCAAAGGCTTAATATGGCATCTCTGCAGTGTCGTTCTGGTCCCATGTCACTACATATACCACAGCCAGGCTTCAAAATACAGGATGTACTCTCTCTTGCCTATTTGAGACGTATGCCTGCTTTGTTAAAGGAGGTTCTCACCATAACAAATTGGGAACAAACTGTACTTGAGTATAAAGCAGGCAGTGCTGACTCAAAGTACTGAGAAGAACCAGAGTGTTTTGGTCCAAGTTCAGATTTCCTATGGGGCACACGGGCAGATTTCTGTTTCTTTTATTCTTCAAAAGAAAGTACTGAGGATTGTGTTGACAGAATGGCTTTGATAATACCACAGTAAGAGAGAAGGGCTAATTTTTAATGAGGTGCTATTAAGCCACTGCTAGTTATCTCTCTAACTTTTACAGGAATGCTTGTGAGAAATCTAATGTGCAGTAATTTATGTGAAGGTGATGGAGTAAAGTAGAGGTAAAAGTACCCTTTGCTCTGCCCTCATCTTGAAGGAAAACTTGGAGAACCCTGGAATGTCCAGTGAGGTTTCATGTTTTCTAAGTCCTTCAGCAAGTACAAATGATGTTTAATTAGATTTGACGTGTTTGGAATTGAGAGTTAATTGAATTGTCAACTCTAAACCCTCCCAACAACTGCACAGAGCTGTAACCCTGGGGCAGTCTTTTGTCTTTTAGAAGCTTCTGTTATGGTCAGTGTTGCACCTAAAGAAGTACAGGGAAAGCAGTGTTGAAGATAGTAGTAGTTTTCAGAAAACTACTTCATAATTTCTGTGCTTAAGATGTGTATGAATGAACTCTTTGATTTTCATTCTTTGTTTTTCTTTTTAG
Seq C2 exon
GAAAAGGCACTCCTAGAGGACATAAAATTAGTGACTATTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410:ENSGALT00000000559:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]