GgaINT0143677 @ galGal3
Intron Retention
Gene
ENSGALG00000001109 | GTSF1
Description
NA
Coordinates
chr27:1020113-1021130:+
Coord C1 exon
chr27:1020113-1020162
Coord A exon
chr27:1020163-1021098
Coord C2 exon
chr27:1021099-1021130
Length
936 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GAGTAACTAAATTCTTTCAGTTG
3' ss Score
3.58
Exon sequences
Seq C1 exon
NNNNCAAATTTCCCTTTTGTTTGGGGGATGACCAACTCTGGTATAAACAG
Seq A exon
GTAAGGAGTGCAAATTTCATAACTTACAACAGTGTTTTGTATAGAAAAATATTGCAGCCTACTTCCAGTCCAGTCTTGATTGCTGGACATTTGCTGGCTTTGCTGTTGTGCAGGCTCAGGGAAGAGGGGAAACATTAACAGTGAATGTCTTCATGCTGCAGGTTCATTGTTACCTTCTTTCTTTTCACTGACCCTTGCCAGAGAAGGATGCTCCGAGGGACTGGCCAGTGTGTAGTTCCACTGGATATCTGGCCAATATATGAGATGTGTGCCAGTATGTTGACTTGGAAATGTGGCCAGATGCCTCCCTTTGGAGGAGTTTGTTCAGTTACTCCTCTCCTCTTGAACTAATGGTTAGCTAGCAGTCCTTTGTGACCTCTTGTTGCATTATACTTGGCAGATGTGCTGGCATAAGGACCCTGTGTTAGCAGAAATCCCCTCTTGCCTTTTGTAAAGTGTGATCACAGCGTAGGTTTAGATGAAGGAAAAGCGTGGTGGGCAGTTGTGCACTTGATGGAGCAGCCTTGCCTGACGTCATTGAGCCAACAGTAGATCACTATTGCAGTCTGTATATGAGGTGTGATTACAGCACCAGATTTACTAAAGTATGTTTTAAGGTTTGTCTAAGCCAGTNNNNNNNNNNACTGGCTTAGACAACAGAAGAAACAGTTTTCCAGCTGGCGGTCTTGCAGTTATATATGGGCTCAAGCATGATGTAGTCCTCGTGTGAAAGGTTTCAACAGTGCTGTGTAGCTTCACTCATTATAATCTCTGGAAGACTTTCTAGTGTTTAGAGCATATATAGATATTCTAAATATCACCACTGCCAGGCAGCAAAGTATCATCTCCTTGTGTCCCTGTTCTGCTCCATACTATTGTAAAGTGCATAAATTTGAGCAAGTACATTAGTCAAGAGGAGTAACTAAATTCTTTCAG
Seq C2 exon
TTGCAGTGTCACCTCTGGACAAAAGAATTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001109:ENSGALT00000001663:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]