GgaINT0145336 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NBU4]
Coordinates
chr28:3448567-3449631:+
Coord C1 exon
chr28:3448567-3449158
Coord A exon
chr28:3449159-3449485
Coord C2 exon
chr28:3449486-3449631
Length
327 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ATAACATCTGTGTTTCGTAGCTG
3' ss Score
6.85
Exon sequences
Seq C1 exon
AAGCTGAATGTGCAGTGGGAACTAGGGTTGCGTGGCTGCGTCTGTCCATGGCAGTCACAGCCTGGGTTACCATACAGTGGCAGACAGATTTACTTAATAGCATTCTGAAGGTTCCAACCTGATTTATTAACTTTAAAGTATTTAATTCCCAAAGTTACTTCACATGGCTTATATTAGTGTCAGTGGTTTCCTCAGGTGTTTTCTCAGGCATTTGCACACAGTTGAAGTTGGAAAAAGCACCGATTGTTTACAAAAAGAGGTGTGGAAGCTGGCATTGTGCTTTGTAATTGCAGGTGACTTCTGCCTAGCTCTGATTTTGCATGGAATTTGTTGGAGCACTTTAAAGATTTACTGCCAGAATTTCAGGTGTGAGATCCCTGCTTTGGAGGTCTTCAGCAGGACGTCTTCAAGAACCGTGAAGAAATTGTGATTATTTAATAACAAGAAATAAAAGCTGGGAAGAACGTATTTCTAGTCGAGTCTCAGGCAATGGGTGGCACTGCTGTTGTCCTTTGTCTTATTTTGCAATTAACGCAGGAGGTAAAAGCATCTGTTGGGAACTGCATTCCCAGAAAAACAGTGAAATACCAAA
Seq A exon
GTAAGTGAAAAGGAATCATTTGATGAGCAGAAAGAGACATAAAGCAATACTGGGGCTTCATTTCTTGTTAGGGGCAGGAAGGAATACTATTGACTGTCTCACCTCAGTGTTAGTACTTGCATTCACCTAACTGACTGTGGTATGTCCAAATGTAATAATAATAGCGTTGTTTAACTGAATACTTTGGTCTTATTTAGAAACTCTTTTAGAAATACATATAAACTTTCACAATGTTTGGTTATTATTTGTTTTCAACTGGGAATTTTTATTATGCAACACTGAGTTTCCAGTGATAATTTGTTTTATAATAACATCTGTGTTTCGTAG
Seq C2 exon
CTGTAAGTGTAGAAATGTTTGTGAAAGAAGGCTTGTCCAATGTCTCCACTCTCCTTGTGGATGAAGAAACTGATACACTGTTTGTTGGAGGCAGGGATGTCATATCTGCCCTTGATTTGAATAACGTTTCCAGAGAAATTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003058:ENSGALT00000004831:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0140314=Sema=PU(7.9=69.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGGTGTGAGATCCCTGCT
R:
GGGCAGATATGACATCCCTGC
Band lengths:
342-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]