GgaINT0145339 @ galGal3
Intron Retention
Description
NA
Coordinates
chr28:2782534-2783027:+
Coord C1 exon
chr28:2782534-2782632
Coord A exon
chr28:2782633-2782927
Coord C2 exon
chr28:2782928-2783027
Length
295 bp
Sequences
Splice sites
5' ss Seq
ATGGTGATT
5' ss Score
3.18
3' ss Seq
AAAGTGATTGCTTGCCTTAGGTT
3' ss Score
5.24
Exon sequences
Seq C1 exon
ATAAGGTGCCAAAACTACATCCTCCTCCTCCATAAGATCAATGACTCCAACGTGTATGTTTGTGGAACAAATGCCTATCACCCGCTGTGTGACCACATG
Seq A exon
GTGATTATATTTGAATATGGGTTTTACTTGAAGGAGCTCGAGTCATATGGCAAATTTTAAACGCCTTTCTAAGAATATTTCAGTTGAAAATTAGAAACTCTCCAAGTTAGTTCTCTCATAAACACATGAAACACCAAGAAAATATTTTCCCAAATGTTATTTCTTTTTGCACAAAATTCACGTTTCTATAGTAACTTCTGTGATCATTTTCCTTTAAGTGCATTTGCCATTTGTTTCAATGTATTACATGGGAACGATGTTTTCTTCATCCTATCAAAGTGATTGCTTGCCTTAG
Seq C2 exon
GTTATCCAGAGGACAAAGATGCATTTGCAAGGAAGAGCTGAAGAGAGCAGAGGGAAGTGTCCTTTTGAACCAACTCTGAAGTATGCATCTGTTTTTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003058:ENSGALT00000004831:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.4=100)
A:
NA
C2:
PF0140314=Sema=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGCCAAAACTACATCCTCC
R:
CTACAAAAACAGATGCATACTTCAGA
Band lengths:
196-491
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]