GgaINT0145340 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NBU4]
Coordinates
chr28:3450620-3450975:+
Coord C1 exon
chr28:3450620-3450719
Coord A exon
chr28:3450720-3450864
Coord C2 exon
chr28:3450865-3450975
Length
145 bp
Sequences
Splice sites
5' ss Seq
TAGGTGTGT
5' ss Score
4.3
3' ss Seq
TTTCCTCTAAACCTTTACAGATG
3' ss Score
9.55
Exon sequences
Seq C1 exon
GTTATCCAGAGGACAAAGATGCATTTGCAAGGAAGAGCTGAAGAGAGCAGAGGGAAGTGTCCTTTTGAACCAACTCTGAAGTATGCATCTGTTTTTGTAG
Seq A exon
GTGTGTTTTCACTGATGTACAACCTTGAAGACTTTTTGTTATCTTAATTCTGTTTTTGAATATCAACCCATTTGTTCCTTAAGATTTGCCTTTGTATTTTAAAATAAAGTACTTGATGCTTTTAGTTTCCTCTAAACCTTTACAG
Seq C2 exon
ATGGGGCATTTTACTCAGCTACTTCCAATAATTTCTTGGGAACAGAACCTATAATACTTCGCAGCATGCAAAATCCTGTAAGAACAGAATTTAAGACATCTTGGCTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003058:ENSGALT00000004831:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.6=100)
A:
NA
C2:
PF0140314=Sema=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGGACAAAGATGCATTTGC
R:
TAGCCAAGATGTCTTAAATTCTGTTC
Band lengths:
202-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]