GgaINT0145344 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NBU4]
Coordinates
chr28:3453115-3453813:+
Coord C1 exon
chr28:3453115-3453271
Coord A exon
chr28:3453272-3453590
Coord C2 exon
chr28:3453591-3453813
Length
319 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAAT
5' ss Score
-0.19
3' ss Seq
TCATTATGTCTTGTTTCCAGTGT
3' ss Score
8.3
Exon sequences
Seq C1 exon
GGGAAGATTGGACATATCAGCTGTTTGTGCATACAGCATGGCAAGTATTCAGGAAGCCTTCTCCAAAGGAAGCTACAGAGGACCAGTAACTGTGGAACATTCCCATGTTAGATGGATGGTTTTTAGAGGAGAGGTGCCGGTTCCACGTCCTGGTGCT
Seq A exon
GTAAATACAACTTTACTTGTTCTCATTAAACAATAGTTACTCCTATCTTTTTTTGGTAGCAAACCATTGGCGCTACTGATATAAATGCTGTGTTTCTAATCAGCAGAGAGCTGCTTTCTCACTGTGTCACAGGCCACCCTCAGGACAGCTGCCCTGCAGTTCTGCTCTGCAGGAATTGTGGGGTTATTAGCTGGTTTGTAGACCGAGGAAAATGATTGTTCTTGTTTGAAGTTAGATGGAAATACCAGCATTTAGAGAAAATTCACCTTCCTGAAATGTAAAAGCAATTGCGATCAGTTTCATTATGTCTTGTTTCCAG
Seq C2 exon
TGTATTGATAATTTTGCCCGGAACATGGGGTATAATACATCTTCAGACCTGCCTGACAAAGTTTTGCAGTTTGCTAGAGATCACCCTCTGATGGACAGTTCTGTAAATCCAATTGGTGATAGGCCAGCACTGCTGAAGAGGAGCTCAAACTATACCAGGATTGTGGTAGACAGAGTCACTGGCCTAGATAAACAGACCTACGATGTTATGTTTCTAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003058:ENSGALT00000004831:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(12.0=100)
A:
NA
C2:
PF0140314=Sema=FE(17.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGATTGGACATATCAGCTGT
R:
AGGCCAGTGACTCTGTCTACC
Band lengths:
342-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]