GgaINT0145346 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NBU4]
Coordinates
chr28:3454266-3454979:+
Coord C1 exon
chr28:3454266-3454381
Coord A exon
chr28:3454382-3454812
Coord C2 exon
chr28:3454813-3454979
Length
431 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
ACTCTCTCCTACATTTCTAGGGG
3' ss Score
9.63
Exon sequences
Seq C1 exon
ATGATGGATATTTGCATAAAGCTTTCAATTGCAATGGAGAAATGTTCATTGTGGAAGAGCTGCAGCTGTTTCTGTCCCCTGAGCCTGTACAGTTCCTGCAGCTGTCTGCTAAAAAG
Seq A exon
GTAGAGCTGCTGTCCCTGCATATGGAAAGTGACTGCTGTAATAACTTGCCTCAGGCCTTGCTCTTCTGTAGTGTTCTTCTGACTTTAAATAGCCTGTAAATACCTCATAATTCTGTTTTCATCATATATTAGCTAATAACAGCAGCACAACACCTGTTTTTGTCTATAGAAAAAGAGTAAGTTTGTGTAAGAATATTACTGAACCAAGCCTTATGATCATTAAAAGAAACGGGGAAGGAACTCTGTCATTTTATGTGTTGCACAGAGCTGTTTTTTCTCATTTATATCAGCATCTATTCTTTTAAGGATTTTAGTTTACTGACTTTTTTTTTTTAATAAGTGCTAGAAAATAATATAATCCATGTTAGAAAATAACAGCTTAAAATCTCATTCACCATTATAAAACAAAAAACTCTCTCCTACATTTCTAG
Seq C2 exon
GGGATGCTCTATGTGGGGTCCATGTCTGCAGTGGTACAGCTTCAAGTTTCGGGCTGCCACCGATATAAGTACTGCTTGGACTGCATCCTGGCAAGAGACCCGTACTGCGCCTGGTCTCAGGCTTCCCATGCCTGTGTTCTACTGTCAGATCAGACTGGTGATACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003058:ENSGALT00000004831:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.8=100)
A:
NA
C2:
PF0143720=PSI=PU(66.7=67.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGATATTTGCATAAAGCTTTCA
R:
TGTATCACCAGTCTGATCTGACAGT
Band lengths:
280-711
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]