GgaINT0145556 @ galGal3
Intron Retention
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:339276-339777:+
Coord C1 exon
chr28:339276-339503
Coord A exon
chr28:339504-339645
Coord C2 exon
chr28:339646-339777
Length
142 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ACTTACTGTTTTACCTTCATGCA
3' ss Score
1.66
Exon sequences
Seq C1 exon
ATGTGCGTGTGGAACAGTGCTACATGAAGTGGGATGAAGATGAGTGCACAGAGCCTCTGCCGGGCAAGTACCGGATCGACATGTGCTGCTGTTCTGTGGGCTCAGCCTGGGGCATCGATTGTGAAGAATGTCCTAAGGTTGGTTCTAATGAGTACAAGGCCATCTGCCCAAGGGGACCTGGCTTTGCCAACCGAGGGGACGTGCTTTCAGGCAGGCCCTTCTACAAAG
Seq A exon
GTAAGAAGAAAGAGAGGAGCTGCTAATTGTAGGCTGTCCTCAGCCCATCTCAACTACAGCTCAAGGAAGCTGCTCCCTGCTCTGGGATCCTAAGTTCATTGCAGACATCCCCTCCCTGAAGCACTTACTGTTTTACCTTCAT
Seq C2 exon
GCACAGATGTGAATGAATGTAAAGTCTTCTCTGGCCTGTGCACTCATGGGACATGTCGAAACACCATTGGCAGCTTCAGATGTATCTGTGGCAATGGCTTTGCTCTGGATGCTGAGGAAAGGAACTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327:ENSGALT00000000433:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=WD(100=54.5)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=91.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGTACCGGATCGACATG
R:
AAGCTGCCAATGGTGTTTCGA
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]